Locus 4650

Sequence ID 2R_DroMel_CAF1
Location 15,178,375 – 15,178,469
Length 94
Max. P 0.595433
window7479

overview

Window 9

Location 15,178,375 – 15,178,469
Length 94
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 74.54
Mean single sequence MFE -11.32
Consensus MFE -1.48
Energy contribution -0.96
Covariance contribution -0.52
Combinations/Pair 1.40
Mean z-score -1.46
Structure conservation index 0.13
SVM decision value 0.12
SVM RNA-class probability 0.595433
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15178375 94 + 20766785
CCCCAAGUAUCCGCUACACCAACUUGCCAUUAACUAAAGGCAACCACAU----CUUGGACUCACUCAACC---UGUUUAAAUUUCAGUUAGACAUU-GAUCA
..(((((((.....)))......(((((..........)))))......----.))))......((((..---(((((((.......)))))))))-))... ( -13.00)
>DroSec_CAF1 8819 93 + 1
CCCCAAGUAUCCGCAACACCAACUUGCCAUUAACUAAAGGCAUCCACAUCUGUCUUGGACUCACUCAAUC---UGUUUAAAUUCCAGUUAAAU------UCA
............((((.......))))..((((((.((((((........))))))(((...((......---.))......)))))))))..------... ( -10.40)
>DroSim_CAF1 8804 93 + 1
CCCCAAGUAUCCGCAACACCAACUUGCCAUUAACUAAAUGCAUCCACAUCUGUCUUGGACUCACUCAAUG---UGUUUAAAUUCCAGUUAAAU------UCA
............((((.......))))..((((((.(((..(..(((((.((...((....))..)))))---))..)..)))..))))))..------... (  -9.20)
>DroEre_CAF1 8829 80 + 1
CCCCAAGUAUCCGCUGCACCAACUGGCCAUUAACUGAGCUCAUCCACG-------------CACUCAA--------UCAAAUUUCAGUUAGAUACU-GAUCA
.....((((((.(((.........)))...(((((((((........)-------------)......--------.......)))))))))))))-..... ( -11.91)
>DroYak_CAF1 8857 89 + 1
CCCCAAGUAUCCGCGACACCAACUUGCCAUUAACUAAGAUCAUCCAAG-------------AUCUCAAAUUCAAAUUUAAAUUUCAGUUAGAUACUCAAUCA
.....((((((.((((.......))))...(((((.(((((......)-------------)))).(((((........))))).)))))))))))...... ( -12.10)
>consensus
CCCCAAGUAUCCGCAACACCAACUUGCCAUUAACUAAAGGCAUCCACAU____CUUGGACUCACUCAAUC___UGUUUAAAUUUCAGUUAGAUA_U__AUCA
............((((.......))))..((((((..................................................))))))........... ( -1.48 =  -0.96 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:45 2006