Locus 465

Sequence ID 2R_DroMel_CAF1
Location 2,650,861 – 2,650,952
Length 91
Max. P 0.713190
window889

overview

Window 9

Location 2,650,861 – 2,650,952
Length 91
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 82.03
Mean single sequence MFE -25.30
Consensus MFE -16.04
Energy contribution -16.71
Covariance contribution 0.67
Combinations/Pair 1.09
Mean z-score -2.16
Structure conservation index 0.63
SVM decision value 0.38
SVM RNA-class probability 0.713190
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2650861 91 - 20766785
UGAGGG----UUUAAGUCGGAGGAACUCUUUUUAGCACAAAUAAACUUGGCUACAUUGUUGCCCGGCUU-UGGCCAUCCGCUCCUUC-CCUCCCUCC
.(((((----....((.(((((((((......((((.(((......)))))))....))).)).(((..-..))).))))))....)-))))..... ( -27.20)
>DroPse_CAF1 95524 86 - 1
CGGGGGGGAAGCUAAGUCUGGAAAACUCUUUUUAGCACAAAUAAACUGGGCUACAUUGUUGCCUGGCUU-CUGGCAGCCCCCCA----------CCC
..((((((..((((.(((((((((....))))))).)).......(..(((.........)))..)...-.))))..)))))).----------... ( -31.80)
>DroSim_CAF1 83210 92 - 1
CGAGGG----UUUAAGUCGGAGGAACUCUUUUUAGCACAAAUAAACUUGGCUACAUUGUUGCCCGGCUU-UGGCCAUCCGCUCCUUCCCCUCCCUCC
.(((((----....((.(((((((((......((((.(((......)))))))....))).)).(((..-..))).)))))).....)))))..... ( -26.20)
>DroEre_CAF1 83971 82 - 1
UGAGGG----UUUAAGUCGGAGAAACUCUUUUUAGCACAAAUAAACUUGGCUACAUUGUUGCCCGGCUU-UGGGCAUCCGCUCC----------UCC
.((((.----....((.((((...........((((.(((......)))))))......((((((....-))))))))))))))----------)). ( -22.70)
>DroYak_CAF1 81004 79 - 1
---GGG----UUUAAGUCGGAGAAACUCUUUUUAGCACAAAUAAACUUGGCUACAUUGUUGCCCGGCUU-UGGCCAUCCCCCCC----------UUC
---.((----(..(((((((.(.(((......((((.(((......)))))))....))).))))))))-..))).........----------... ( -21.70)
>DroAna_CAF1 88494 82 - 1
CGAGGG----GUUAAGUCUGAGAAACUCUUUUUAGCACAAAUAAACUUGGCUACAUUGUUGCCCGGCUUUUGGCCAUCC-CUUC----------UUC
.(((((----(....(((((((((....))))))).)).........((((((....(((....)))...)))))).))-))))----------... ( -22.20)
>consensus
CGAGGG____UUUAAGUCGGAGAAACUCUUUUUAGCACAAAUAAACUUGGCUACAUUGUUGCCCGGCUU_UGGCCAUCCGCUCC__________UCC
.(((((.......(((((((.(.(((......((((.(((......)))))))....))).))))))))........)).))).............. (-16.04 = -16.71 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:18 2006