Locus 4649

Sequence ID 2R_DroMel_CAF1
Location 15,176,447 – 15,176,544
Length 97
Max. P 0.966624
window7478

overview

Window 8

Location 15,176,447 – 15,176,544
Length 97
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 78.97
Mean single sequence MFE -37.94
Consensus MFE -29.00
Energy contribution -28.25
Covariance contribution -0.75
Combinations/Pair 1.17
Mean z-score -4.74
Structure conservation index 0.76
SVM decision value 1.60
SVM RNA-class probability 0.966624
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15176447 97 - 20766785
--UGAGCCACCUAA-GGUCCCGAUCCUGGGAUGCAUCUUGUGCAGUUAUGUUUCAA---------UCUCACAUCACUGGGCAAAGUGUGUCUCAAGAUCCUGG---CCACAU
--............-((((..((((.(((((((((..((((.((((.((((.....---------....)))).)))).))))..))))))))).))))..))---)).... ( -36.40)
>DroSec_CAF1 6897 97 - 1
--UGAAUCACCAAA-GGUCCCGAUCCUGGGAUGCAUCUUGUGCAGUUAUGUUUCAA---------UCUCACAUCACUGGGCAAAGUGUGUCUCAAGAUCCUGG---CCACAU
--............-((((..((((.(((((((((..((((.((((.((((.....---------....)))).)))).))))..))))))))).))))..))---)).... ( -36.40)
>DroEre_CAF1 6902 97 - 1
--UGAACCCACCAA-GGUCCUGAUCCUGGGAUGCAUCUUGUGCAGUUAUGUUUCUA---------UCUCACAUCACUGGGCAAAGUGUGUCUCAAGAUCCUGG---CCACUU
--............-((((..((((.(((((((((..((((.((((.((((.....---------....)))).)))).))))..))))))))).))))..))---)).... ( -36.50)
>DroWil_CAF1 36868 111 - 1
AGUAAUCGAAUUUA-GACCAUGAUUUUGGGAUGCAUUUUGUGCAGUUAUGUCUUCAUGUGAUAAUUCUCUCAUCACUGGGCAAAGUGUGUCUCAUAAUUUUGGUAACCAUAU
..............-.((((.((((.(((((((((((((((.((((.(((.....((......)).....))).)))).))))))))))))))).)))).))))........ ( -34.00)
>DroYak_CAF1 6911 97 - 1
--UGAACCAUCAAA-GGUCCUGAUCCUGGGAUGCAUCUUGUGCAGUCAUGUUUCCA---------UCUCACAUCACUGGGCAAAGUGUGUCUCAAGAUCUUGG---CCACUU
--............-((((..((((.(((((((((..((((.((((.((((.....---------....)))).)))).))))..))))))))).))))..))---)).... ( -37.40)
>DroAna_CAF1 2845 102 - 1
--UGAGCCCCCAACUGGCUACGAUCUUGGGACGCAUUUUGUGCAGUUAUGCACCAA---AAAUA-UAUC-CAUCACUGGGCAAAGUGUGUCUCAGGAUCUUGG---CCAUCU
--............((((((.((((((((((((((((((((.((((.(((......---.....-....-))).)))).)))))))))))))))))))).)))---)))... ( -46.96)
>consensus
__UGAACCACCAAA_GGUCCCGAUCCUGGGAUGCAUCUUGUGCAGUUAUGUUUCAA_________UCUCACAUCACUGGGCAAAGUGUGUCUCAAGAUCCUGG___CCACAU
...............((((..((((.((((((((((.((((.((((.(((....................))).)))).)))).)))))))))).))))..))...)).... (-29.00 = -28.25 +  -0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:44 2006