| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,175,854 – 15,175,957 |
| Length | 103 |
| Max. P | 0.965295 |
| Location | 15,175,854 – 15,175,957 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 78.68 |
| Mean single sequence MFE | -31.89 |
| Consensus MFE | -27.58 |
| Energy contribution | -27.66 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.16 |
| Mean z-score | -3.82 |
| Structure conservation index | 0.86 |
| SVM decision value | 1.58 |
| SVM RNA-class probability | 0.965295 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15175854 103 - 20766785 ----AAUCACAGCCUUUAAUGUAGAGGGAAUAGUUGCUGUGCUGUAAGUUAAUAUACCAUAUCUAUAUCACAGUGGCUGUUCUUUUUGUACCUAAAGUGCCUAACAU ----.......(((((((.(((((((((((((((..(((((.((((..(...........)..)))).)))))..)))))))))))))))..))))).))....... ( -31.00) >DroPse_CAF1 11005 100 - 1 -----ACACCAGCCUUUGAAGUAGAGAGAAUAGUUGCUGUGCUAUAUGUCCUUCGACUC--UAUAUAUCACAGUGGCUGUUCUUUUUGUACCUAAAGUGCCAAACAG -----......(((((((...(((((((((((((..(((((.((((((((....)))..--.))))).)))))..)))))))))))))....))))).))....... ( -34.20) >DroGri_CAF1 2461 106 - 1 UGUGGUUUAUAGCCUUUAAUGUAAAGAGAAUAGAUGCUGUGCUGUAUGUUGAACG-UAUUGUCUAUAUCACAGUGGCUGUUCUUUUUGUACCAAAAGUGCCGUACAA .......((..((((((..((((((((((((((..((((((..(((((.....))-))).........))))))..))))))))))))))...)))).))..))... ( -25.60) >DroWil_CAF1 36261 99 - 1 -----A-ACCAGCCUUUAAAGUAGAGAGAAUAGUUGCUGUGUUUUAUGCCCUUUU--CAAUUUCAUAUCACAGUGGCUGUUCUUUUUGUGCCUAAAGUGCCCCACAA -----.-....(((((((..((((((((((((((..(((((...((((.......--......)))).)))))..))))))))))))))...))))).))....... ( -31.02) >DroAna_CAF1 2250 98 - 1 ----GAUACCCGCCUUUAAAGUAGAGAGAAUAGUGGCUGUGCUGUAAGUUU-----CAAAAUCUAUAUCACAGUGGCUGUUCUUUUUGCACCUAAAGUGCCAAACAG ----.......(((((((..((((((((((((((.((((((.((((..((.-----...))..)))).)))))).))))))))))))))...))))).))....... ( -35.30) >DroPer_CAF1 10462 100 - 1 -----ACACCAGCCUUUGAAGUAGAGAGAAUAGUUGCUGUGCUAUAUGUCCUUCGACUC--UAUAUAUCACAGUGGCUGUUCUUUUUGUACCUAAAGUGCCAAACAG -----......(((((((...(((((((((((((..(((((.((((((((....)))..--.))))).)))))..)))))))))))))....))))).))....... ( -34.20) >consensus _____AUACCAGCCUUUAAAGUAGAGAGAAUAGUUGCUGUGCUGUAUGUCCUUCG_CAA__UCUAUAUCACAGUGGCUGUUCUUUUUGUACCUAAAGUGCCAAACAG ...........(((((((..(((((((((((((((((((((.((((.................)))).)))))))))))))))))))))...))))).))....... (-27.58 = -27.66 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:36 2006