| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,169,366 – 15,169,476 |
| Length | 110 |
| Max. P | 0.652001 |
| Location | 15,169,366 – 15,169,476 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 85.02 |
| Mean single sequence MFE | -23.65 |
| Consensus MFE | -17.29 |
| Energy contribution | -17.49 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.652001 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15169366 110 - 20766785 AUUGUGUUUCUGGGCUAGUUUCCUUGCCGAAAAA--UGUGCAUGAUCCAUCCAAUAUAUCAUGCAUGAUGUGCUGAGCCCACGCAAAUCCCCGGCACAUUAUCUAAUGAUUU ...(..(((.(.(((.((....)).))).).)))--..)(((((((...........)))))))(((((((((((................))))))))))).......... ( -26.19) >DroSec_CAF1 7747 110 - 1 ACUGCCUUUCUGGACUAGUUUUCUUGCCGAAAAA--UAUGUAUGAUCCAUCCAAUAUAUCAUGCAUGAUGUGCUGAGCCCACGCAAAUCCCCGGCACAUUAUCUAAUGAUUU ((((((.....)).).))).....(((((.....--.(((((((((...........)))))))))(((.(((((....)).))).)))..)))))((((....)))).... ( -21.90) >DroSim_CAF1 9441 110 - 1 ACUGCCUUUCUGGGCUAGUUUUCUUGCCGAAAAA--UAUGCAUGAUCCAUCCAAUAUAUCAUGCAUGAUGUGCUGAGCCCACGCAAAUCCCCGGCACAUUAUCUAAUGAUUU (((((((....)))).))).....(((((.....--.(((((((((...........)))))))))(((.(((((....)).))).)))..)))))((((....)))).... ( -28.60) >DroEre_CAF1 9891 110 - 1 ACCAUGUUUCUGGGCUAGUUUGCCUACCGAAAAA--UGUGCAUUAUCCAGCCAAUAUAUCAUGCAUGAUGUGCUGAGCCCACGCAAAUCCCCGGCACAUUAUCUAAUGAUUU ..(((.(((((((((......)))))..)))).)--)).((........))......(((((..(((((((((((................)))))))))))...))))).. ( -25.99) >DroYak_CAF1 8039 90 - 1 ----------------------UUUACCAAAAAAUAUAUGCAUUAUCCAACCAAUAUUUCAUGCAUGAUGUGCUGAGCCCACGCAAAUCCCCGGCACAUUAUCUAAUGAUUU ----------------------....................................((((..(((((((((((................)))))))))))...))))... ( -15.59) >consensus ACUGCCUUUCUGGGCUAGUUUUCUUGCCGAAAAA__UAUGCAUGAUCCAUCCAAUAUAUCAUGCAUGAUGUGCUGAGCCCACGCAAAUCCCCGGCACAUUAUCUAAUGAUUU .....................................(((((((((...........)))))))))(((((((((................)))))))))............ (-17.29 = -17.49 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:31 2006