Locus 4641

Sequence ID 2R_DroMel_CAF1
Location 15,168,339 – 15,168,459
Length 120
Max. P 0.948611
window7462

overview

Window 2

Location 15,168,339 – 15,168,459
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 98.72
Mean single sequence MFE -23.23
Consensus MFE -21.97
Energy contribution -21.97
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.33
Structure conservation index 0.95
SVM decision value 1.38
SVM RNA-class probability 0.948611
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15168339 120 + 20766785
CCCACUCAGCAAGUUGGCCACAAACAAACUUCCUGUAUCGAUGGUAACACUCACGUACCUUUAUCGCCCAGCCCCCGGGCCAAUAUCUAAGUGAAAACACAGAUCAACAGUACGACAAUC
.((((.(((.((((((........).))))).)))....).))).........(((((..(((((((((.......))))..........(((....))).))).))..)))))...... ( -22.10)
>DroSec_CAF1 6729 120 + 1
CCCACUCAGCAAGUUGGCCACAAACAAACUUCCUGUAUCGAUGGUAACACUCACGUACCUUUAUCGCCCAGCCCCCGGGCCAAUAUCUAAGUGAAAACACAGAUCAACAGUACGACAAUC
.((((.(((.((((((........).))))).)))....).))).........(((((..(((((((((.......))))..........(((....))).))).))..)))))...... ( -22.10)
>DroSim_CAF1 8416 120 + 1
CCCACUCAGCAAGUUGGCCACAAACAAACUUCCUGUAUCGAUGGUAACACUCACGUACCUUUAUCGCCCAGCCCCCGGGCCAAUAUCUAAGUGAAAACACAGAUCAACAGUACGACAAUC
.((((.(((.((((((........).))))).)))....).))).........(((((..(((((((((.......))))..........(((....))).))).))..)))))...... ( -22.10)
>DroEre_CAF1 8874 120 + 1
CCCACUCAGCAAGUUGGCCACAAACAAACUUCCUGUAUCGAUGGUAACACUCACGUACCUUUAUCGCCCAGCCCCCGGGCCAAUAUCUAAGUGAAAACACAGAUCAACAGUACGACAAUC
.((((.(((.((((((........).))))).)))....).))).........(((((..(((((((((.......))))..........(((....))).))).))..)))))...... ( -22.10)
>DroYak_CAF1 6962 120 + 1
CCCACUCAGCAAGUUGGCCACAAACAAACUUCCUGUAUCGAUGGUAACACUCACGUACCGUUAUCGCCCAGCCCCCGGGCCAAUAUCUAAGUGAAAACACAGAUCAACAGUACGACAAUC
.((((.(((.((((((........).))))).)))....).))).........(((((.((((((((((.......))))..........(((....))).))).))).)))))...... ( -25.50)
>DroAna_CAF1 7689 120 + 1
CCCACUCAGCAAGUUGGCCACAAACAAACUUCCUGUAUCGAUGGUAGCACACACGUACGGUUAUCGCCCAGCCCCCGGGCCAAUAUCUAAGUGAAAACACAGAUCAACAGUACGACAAUC
.((((.(((.((((((........).))))).)))....).))).........(((((.((((((((((.......))))..........(((....))).))).))).)))))...... ( -25.50)
>consensus
CCCACUCAGCAAGUUGGCCACAAACAAACUUCCUGUAUCGAUGGUAACACUCACGUACCUUUAUCGCCCAGCCCCCGGGCCAAUAUCUAAGUGAAAACACAGAUCAACAGUACGACAAUC
.((((.(((.((((((........).))))).)))....).))).........(((((..(((((((((.......))))..........(((....))).))).))..)))))...... (-21.97 = -21.97 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:30 2006