Locus 4634

Sequence ID 2R_DroMel_CAF1
Location 15,161,865 – 15,161,964
Length 99
Max. P 0.830805
window7444

overview

Window 4

Location 15,161,865 – 15,161,964
Length 99
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 74.60
Mean single sequence MFE -33.11
Consensus MFE -15.99
Energy contribution -17.38
Covariance contribution 1.39
Combinations/Pair 1.31
Mean z-score -1.97
Structure conservation index 0.48
SVM decision value 0.71
SVM RNA-class probability 0.830805
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15161865 99 - 20766785
GCU------U------AAAUCUGUUGGCUGACAUUGCGGCCAGUGGUAUAACGAAGCCCAAGUCCAGACUAAACAAUCUGAUGAUUGUAGAGACGCCAAUCGGCGGUCUAA
(((------(------....(..(((((((......)))))))..).......))))........((((...((((((....)))))).....((((....)))))))).. ( -32.30)
>DroPse_CAF1 432 108 - 1
GCUCCACCUACAGCUCGGAUCUCUUGGCGGAUAUCGCCGCAAGCAGGAUC---AGACCCAAGUCUAGGCUCAACAAUCUAAUGAUAAUGGAGACGCCAAUUGGCGGAGCAC
(((((.(((........(((((((((.(((......)))))))..)))))---((((....)))))))(((....(((....)))....)))..(((....)))))))).. ( -36.00)
>DroSec_CAF1 255 105 - 1
GCU------UUAGCUCAAAUCUGCUGGCUGACAUUGCAGCCAGUGGUAUAACGAAGCCCAAGUCCAGGCUGAAUAAUCUGAUGAUUGUAGAGACACCAAUCGGAGGACUAA
(((------((.........(..(((((((......)))))))..)......)))))...(((((.(.((..((((((....))))))..)).).((....)).))))).. ( -32.76)
>DroSim_CAF1 252 105 - 1
GCU------UUAGCUCAAAUCUGCUGGCUGAUAUUGCAGCCAGUGGUAUAACGAAGCCCAAGUCCAGGCUGAACAAUCUGAUGAUUGUAGAGACGCCAAUCGACGGUCUAG
(((------(..((((....(..(((((((......)))))))..)......).)))..))))..((((((.((((((....)))))).((........))..)))))).. ( -32.40)
>DroYak_CAF1 243 105 - 1
ACU------UGAGCUCAAAUCCACUGACUGACAUUGCAACAAGUAGUACACAGAAGCCCAAGAGCAGGCUGAACAAUCUGAUGAUUGUGGAGACGCCAAUCGGUGGACUAC
...------..........(((((((((((..(((((.....)))))...)))..((......)).(((...((((((....))))))(....))))..)))))))).... ( -29.20)
>DroPer_CAF1 432 108 - 1
GCUCCACCUACAGCUCGGAUCUCUUGGCGGAUAUCGCCGCAAGCAGGAUC---AGACCCAAGUCUAGGCUCAACAAUCUAAUGAUAAUGGAGACGCCAAUUGGCGGAGCAC
(((((.(((........(((((((((.(((......)))))))..)))))---((((....)))))))(((....(((....)))....)))..(((....)))))))).. ( -36.00)
>consensus
GCU______UCAGCUCAAAUCUGCUGGCUGACAUUGCAGCAAGUAGUAUAACGAAGCCCAAGUCCAGGCUGAACAAUCUGAUGAUUGUAGAGACGCCAAUCGGCGGACUAC
.............(((....(((((.((((......)))).)))))........((((........))))..((((((....)))))).))).((((....))))...... (-15.99 = -17.38 +   1.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:12 2006