Locus 4632

Sequence ID 2R_DroMel_CAF1
Location 15,152,742 – 15,152,838
Length 96
Max. P 0.870931
window7441

overview

Window 1

Location 15,152,742 – 15,152,838
Length 96
Sequences 4
Columns 96
Reading direction forward
Mean pairwise identity 90.97
Mean single sequence MFE -21.65
Consensus MFE -17.54
Energy contribution -17.48
Covariance contribution -0.06
Combinations/Pair 1.12
Mean z-score -2.05
Structure conservation index 0.81
SVM decision value 0.87
SVM RNA-class probability 0.870931
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15152742 96 + 20766785
UUUAGACCUAUAACUAAUUGAAUAUAGGAUCAUAUUGCCAGUCAUCUAACCAAAUUGUCGUCGACGAAGGAGCGAAAGAAAUCAGGAUGACUCAAA
....((((((((..........)))))).))...(((..((((((((.......(((((...)))))..((.(....)...)).))))))))))). ( -20.90)
>DroSec_CAF1 124924 96 + 1
UUUAGACCUAUAACUAAUUGAAUAUAGGAUCAUAUUGCCAGUCAUCCAACCAAAUUGUCGUCGACGAAGGAGCCAAAGAAAUCGGGAUGACUCAAA
....((((((((..........)))))).))...(((..((((((((..((...(((((...))))).)).......(....).))))))))))). ( -20.10)
>DroSim_CAF1 109972 96 + 1
UUUAGACCUAUAACUAAUUGAAUAUAGGAUCAUAUUGCCAGUCAUCCAACCAAAUUGUCGUCGACGAAGGAGCCAAAGAAAUCAGGAUGACUGAAA
....((((((((..........)))))).)).......(((((((((..((...(((((...))))).)).......(....).)))))))))... ( -23.50)
>DroEre_CAF1 128946 96 + 1
UUUAGACCUAUAACUAAUUGAGUGUAGGAUCAUAUUGCUAGUCAUCCAGCCAAAUUGUAUUCAAAAACGGAGCGAAUGAUUUCAGGAUGACUCAAA
....((((((((.((.....)))))))).))...(((..((((((((.(((...(((....))).....).))(((....))).))))))))))). ( -22.10)
>consensus
UUUAGACCUAUAACUAAUUGAAUAUAGGAUCAUAUUGCCAGUCAUCCAACCAAAUUGUCGUCGACGAAGGAGCCAAAGAAAUCAGGAUGACUCAAA
....((((((((..........)))))).))........((((((((..((...(((((...))))).)).......(....).)))))))).... (-17.54 = -17.48 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:10 2006