Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,149,938 – 15,150,053 |
Length | 115 |
Max. P | 0.577877 |
Location | 15,149,938 – 15,150,053 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 96.38 |
Mean single sequence MFE | -24.69 |
Consensus MFE | -23.98 |
Energy contribution | -23.97 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.46 |
Structure conservation index | 0.97 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.577877 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15149938 115 + 20766785 CUCCUUUGUAAUCUGGCCGUAGGGUGCUGCAUUUCCCCCAGAUUUUCCAUUUUAAAGCAUUUUCAGCCGAAAUGACGCUCUCGAAACGGCCCACACAGAUACACCAUCACACUCA ......((((.(((((((((.(((.((..((((((.....(......)........((.......)).))))))..)).)))...)))))).....)))))))............ ( -24.10) >DroSec_CAF1 122042 115 + 1 CUCCUUUGUAAUCUGGCCGUAGGGUGCUGCAUUUCCACCAGAUCUCCCAUUUUAAAGCAUUUUCAGCCGAAAUGACGCUCUCGAAACGGCCCACACAGAUACACCAUCACACUCA ......((((.(((((((((.(((.((..((((((.....(......)........((.......)).))))))..)).)))...)))))).....)))))))............ ( -24.10) >DroSim_CAF1 107084 115 + 1 CUCCUUUGUUAUCUGGCCGUAGGGUGCUGCAUUUCCACCAGAUCUCCCAUUUUAAAGCAUUUUCAGCCGAAAUGACGCUCUCGAAACGGCCCACACAGAUACACCAUCACACUCA ......(((.((((((((((.(((.((..((((((.....(......)........((.......)).))))))..)).)))...)))))).....)))))))............ ( -24.10) >DroEre_CAF1 126200 114 + 1 CUCCUUUGUAAUCUGGCCGUAGGGUGCUGCAUUUCCCCCAGAUCUCACAUUUUAAAGCAUUUUCGGCCGAAAUGACGCUCUCGAAACGGCCCACACAGAUACACCA-CACACACA ......((((.(((((((((.(((.((..((((((..((.((....................))))..))))))..)).)))...)))))).....)))))))...-........ ( -26.45) >consensus CUCCUUUGUAAUCUGGCCGUAGGGUGCUGCAUUUCCACCAGAUCUCCCAUUUUAAAGCAUUUUCAGCCGAAAUGACGCUCUCGAAACGGCCCACACAGAUACACCAUCACACUCA ......(((.((((((((((.(((.((..((((((.....(......)........((.......)).))))))..)).)))...)))))).....)))))))............ (-23.98 = -23.97 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:09 2006