Locus 4628

Sequence ID 2R_DroMel_CAF1
Location 15,140,223 – 15,140,317
Length 94
Max. P 0.702790
window7430

overview

Window 0

Location 15,140,223 – 15,140,317
Length 94
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 77.83
Mean single sequence MFE -31.20
Consensus MFE -22.04
Energy contribution -22.98
Covariance contribution 0.95
Combinations/Pair 1.16
Mean z-score -1.20
Structure conservation index 0.71
SVM decision value 0.36
SVM RNA-class probability 0.702790
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15140223 94 - 20766785
GUCAGCGGGCAAUGCGUUUGGUGGCAGCGACAUCGUCACCAAAAACGCGACUUUCACAGCCGCCGAUGCGUCUGGCAGCAUGACGCAUGCUGCA
(((.(((.((...)).(((((((((.........)))))))))..)))))).....(((.(((....))).)))((((((((...)))))))). ( -36.80)
>DroPse_CAF1 116442 78 - 1
--------GAAAUACGUUGGGAUGCGGCAAC---GUCACUCA-----CUCACUCCACUGUCGCCGAUGUGUCUGGGAGCAUGACGCAUGCCACU
--------.........(((.(((((....)---((((....-----....((((...(.(((....))).)..))))..)))))))).))).. ( -21.50)
>DroSec_CAF1 112308 94 - 1
GUCAGCGGGCAAUGCGUUUGGUGGCAGCUACAUCGUCACCAAAAACGCGACUUUCACAGCCGCCGAUGCGUCUGGCAGCAUGACGCAUGCUGCA
(((.(((.((...)).(((((((((.........)))))))))..)))))).....(((.(((....))).)))((((((((...)))))))). ( -36.80)
>DroEre_CAF1 115958 94 - 1
GUCAGCGGGCAAUGCGUUUGGUGGCAGCGACAUCGUCACCAAAAACGCGAUUUUCAGAGCCGCCGAUGCGUCUGGCAGCAUGACGCAUGCUGCA
(.((((.(((...((((((((((((.........)))))))..)))))(.....)......))).(((((((((....)).)))))))))))). ( -36.30)
>DroYak_CAF1 118043 94 - 1
GUCAGCGGGCAAUGCGUUUGGUGGCAGCAACAUCGUCACCAAAAACGCGAUUUUCACAGCCGCCGAUGCGUCUGGCAGCAUGACGCAUGCUACA
((.(((.(((...((((((((((((.........)))))))..)))))(.....)......))).(((((((((....)).)))))))))))). ( -34.30)
>DroPer_CAF1 116671 78 - 1
--------GAAAUACGUUGGGAUGCGGCAAC---GUCACUCA-----CUCACUCCACUGUCGCCGAUGUGUCUGGGAGCAUGACGCAUGCCACU
--------.........(((.(((((....)---((((....-----....((((...(.(((....))).)..))))..)))))))).))).. ( -21.50)
>consensus
GUCAGCGGGCAAUGCGUUUGGUGGCAGCAACAUCGUCACCAAAAACGCGAAUUUCACAGCCGCCGAUGCGUCUGGCAGCAUGACGCAUGCUACA
.............((((((((((((.........))))))))..))))..........((.((..(((((((((....)).))))))))).)). (-22.04 = -22.98 +   0.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:00 2006