Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,135,243 – 15,135,334 |
Length | 91 |
Max. P | 0.965814 |
Location | 15,135,243 – 15,135,334 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 93.20 |
Mean single sequence MFE | -13.40 |
Consensus MFE | -10.94 |
Energy contribution | -10.94 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.08 |
Structure conservation index | 0.82 |
SVM decision value | 1.59 |
SVM RNA-class probability | 0.965814 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15135243 91 - 20766785 AUCCACUUACGCCCGAGCAUUUCACAACUUUUAAAUGCAAACAAAAAGCACAAAAAAAAAAGAGAUGUGUGGUGCAAAGAAAAUAAUAACA ..........(((((.(((((((.....((((...(((.........)))..)))).....))))))).))).))................ ( -14.30) >DroSec_CAF1 107433 89 - 1 AUCCAUUUACGCCCGGGCAUUUCACAACUUUUAAAUGCAAACAAAAAGCACAAAA--AAAAGAGAAGUGUGGUGCAAAGAAAAUAAUAAAA ..........((((..(((((((....(((((...(((.........))).....--))))).))))))))).))................ ( -12.20) >DroSim_CAF1 91383 89 - 1 AUCCAUUUACGCCCGGGCAUUUCACAACUUUUAAAUGCAAACAAAAAGCACAAAA--AAAAGAGAAGUGUGGUGCAAAGAAAAUAAUAACA ..........((((..(((((((....(((((...(((.........))).....--))))).))))))))).))................ ( -12.20) >DroEre_CAF1 110909 87 - 1 AUCCAUCUACGCCCGAGCAUUUCACAACUUUUAAAUGCAAACAAAAAGCACACAA--AA-AA-GAAGUGUGGAGCAAAGAAAAUAAUAACA .....(((..((((..((((((..........)))))).........((((....--..-..-...)))))).))..)))........... ( -12.00) >DroYak_CAF1 112213 88 - 1 AUCCAUCUACGCCCGAGCAUUUCACAACUUUUAAAUGCAAACAAAAAGCACACAA--AA-AGUGAAGUGUGGAGCAAAGAAAAUAAUAACA .....(((..((((..(((((((((...((((...(((.........)))...))--))-.))))))))))).))..)))........... ( -16.30) >consensus AUCCAUUUACGCCCGAGCAUUUCACAACUUUUAAAUGCAAACAAAAAGCACAAAA__AAAAGAGAAGUGUGGUGCAAAGAAAAUAAUAACA ..........((((..((((((..........)))))).........((((...............)))))).))................ (-10.94 = -10.94 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:59 2006