Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,129,079 – 15,129,181 |
Length | 102 |
Max. P | 0.688313 |
Location | 15,129,079 – 15,129,181 |
---|---|
Length | 102 |
Sequences | 3 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 78.01 |
Mean single sequence MFE | -25.83 |
Consensus MFE | -20.90 |
Energy contribution | -19.13 |
Covariance contribution | -1.77 |
Combinations/Pair | 1.25 |
Mean z-score | -1.23 |
Structure conservation index | 0.81 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.688313 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15129079 102 + 20766785 AAAAAGCGCGAGGCAGCGAGGAAAGUGGAAUUUUUUGUUGUCUCCCAAUGCGUGUUUGGUGUGAACGAACUGUCGCUCAUUCUGAUGCGCUGUUAUUCCAAC ....(((((((((((((((((((.......)))))))))))))).....(((.(((((.......)))))...)))..........)))))........... ( -32.10) >DroPse_CAF1 105527 87 + 1 ---------------GGGGGGAAGGGAUAUUUUUGUUCUGUCUUUUAUUGCGUAUUUGGUGUGAACGAACUGUCGCUCAUUUUGAUGCGCCGUUAUUCCAAC ---------------(((((((.((((((....)))))).)))......(((((((....((((.(((....))).))))...))))))).....))))... ( -22.70) >DroPer_CAF1 105773 87 + 1 ---------------GGGGGGAAGGGAUAUUUUUGUUCUGUCUUUUAUUGCGUAUUUGGUGUGAACGAACUGUCGCUCAUUUUGAUGCGCCGUUAUUCCAAC ---------------(((((((.((((((....)))))).)))......(((((((....((((.(((....))).))))...))))))).....))))... ( -22.70) >consensus _______________GGGGGGAAGGGAUAUUUUUGUUCUGUCUUUUAUUGCGUAUUUGGUGUGAACGAACUGUCGCUCAUUUUGAUGCGCCGUUAUUCCAAC ...................((((((((((....))))))..........(((((((....((((.(((....))).))))...))))))).....))))... (-20.90 = -19.13 + -1.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:58 2006