| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,114,435 – 15,114,535 |
| Length | 100 |
| Max. P | 0.579579 |
| Location | 15,114,435 – 15,114,535 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 78.57 |
| Mean single sequence MFE | -22.00 |
| Consensus MFE | -12.94 |
| Energy contribution | -13.47 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.579579 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15114435 100 + 20766785 GCAUGUUUUCCACUUCACAGGAUUUUAUGUUCC--ACUACACUCGCACUUGGCUCAAGUGUUGGAAAAUACAAUUGCCUGG-GCACACACUCACAUUCGCACA------- ((.(((((((((.......(((........)))--.........(((((((...))))))))))))))))....(((....-))).............))...------- ( -23.50) >DroVir_CAF1 135748 83 + 1 GCAUGUUUUCCACUUCACAGGAUUUUAUGUGCCACACUACGCUC------AGCUCAAGUGUUGGAAAAUACAAUUGCCAG---CACACAUG--C---------------- ((((((..(((........))).....((.((........)).)------)......(((((((.((......)).))))---))))))))--)---------------- ( -18.80) >DroWil_CAF1 159684 107 + 1 GCAUGUUUUCCACUUCACAGGAUUUUAUGUUCC--ACUACGCUCGCUCUCGGCUCAAGUGUUGGAAAAUACAAUUGCCUGG-GCAUAUAUGUAUGUACGUAUAUAAAACA (((((...(((........)))...)))))...--.........((((..(((....(((((....)))))....))).))-))((((((((....))))))))...... ( -26.30) >DroYak_CAF1 95120 89 + 1 GCAUGUUUUCCACUUCACAGGAUUUUAUGUUCC--ACUACACUCGCACUCGGCUCAAGUGUUGGAAAAUACAAUUGCCUCG-GCACACACAC------------------ ...(((((((((.......(((........)))--...(((((.((.....))...))))))))))))))....(((....-))).......------------------ ( -19.10) >DroMoj_CAF1 149372 93 + 1 GCAUGUUUUCCACUUCACAGGAUUUUAUGUGCC--ACUACGCUC------GGCUCAAGUGUUGGAAAAUACAAUUGCCAAGCUCACACACGUACACACAAA--------- ((((((..(((........)))....)))))).--.....(((.------(((....(((((....)))))....))).)))...................--------- ( -21.20) >DroAna_CAF1 95003 89 + 1 GCAUGUUUUCCACUUCACAGGAUUUUAUGUUCC--ACUACGCUGGCACUUGGCUCAAGUGUUGGAAAAUACAAUUGCCUGG-GCAGACGAGC------------------ ((.((((((((........(((........)))--........((((((((...))))))))))))))))...((((....-))))....))------------------ ( -23.10) >consensus GCAUGUUUUCCACUUCACAGGAUUUUAUGUUCC__ACUACGCUCGCACU_GGCUCAAGUGUUGGAAAAUACAAUUGCCUGG_GCACACACGC_C________________ ((((((((((((...(((.(((........))).......(((.......)))....))).)))))))))....)))................................. (-12.94 = -13.47 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:54 2006