Locus 4621

Sequence ID 2R_DroMel_CAF1
Location 15,111,258 – 15,111,348
Length 90
Max. P 0.612101
window7423

overview

Window 3

Location 15,111,258 – 15,111,348
Length 90
Sequences 5
Columns 90
Reading direction forward
Mean pairwise identity 72.22
Mean single sequence MFE -25.38
Consensus MFE -9.18
Energy contribution -10.14
Covariance contribution 0.96
Combinations/Pair 1.25
Mean z-score -1.74
Structure conservation index 0.36
SVM decision value 0.16
SVM RNA-class probability 0.612101
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15111258 90 + 20766785
AAGGCAACCACUGCCAGAUGACAAAGUCUAAGGUGGAGCUAACACCUGGCAGCAAGGCUCGAGCAUUUGCAAAUUGGACAGCCAGAACCA
..(((..(((.((((((((......)))).(((((.......)))))))))(((((((....)).)))))....)))...)))....... ( -28.80)
>DroSec_CAF1 87872 90 + 1
AAAGCAACCACUGCCAGAUGACAAAGUCAAAGGUGGAGCUAACACCUGGCACCAAGGCUCGAGCAUUUGCAAAUUGGACAGCCGGCACCA
...........((((...((((...)))).(((((.......)))))(((.((((.((..........))...))))...)))))))... ( -23.90)
>DroSim_CAF1 71454 84 + 1
AAAGCAACCACUGCCAGAUG------UCGAAGGUGGAGCUAACACCUGGCACCAAGGCUCGAGCAUUUGCAAAUUGGACAGCCGGCACCA
...........((((.(.((------((.((.(..(((((....((((....).)))....))).))..)...)).)))).).))))... ( -22.90)
>DroEre_CAF1 90801 90 + 1
AAAGUAACCACAGCCACAUGACAAAGUCAAGGCUGGAGCUCAAAGCUGCCACUGAAGCUCAAGCUUGUGCAAAUUGGACUGCGGGCUCCA
...........((((...((((...)))).))))(((((((..((((........))))...((..((.(.....).)).))))))))). ( -27.60)
>DroAna_CAF1 91912 84 + 1
CAACUAACCUCAGCCUGGAGGCCAAGUCCAAGGAGCAGAUAGAGCCUUCCAG----ACU--UCCAUCCACGCACUGGACAGCUGGGACUA
........((((((((((((((...(((.........)))...))).)))))----...--....((((.....))))..)))))).... ( -23.70)
>consensus
AAAGCAACCACUGCCAGAUGACAAAGUCAAAGGUGGAGCUAACACCUGGCACCAAGGCUCGAGCAUUUGCAAAUUGGACAGCCGGCACCA
.......((.(((((((.............(((((.......)))))...............((....))...)))).)))..))..... ( -9.18 = -10.14 +   0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:53 2006