Locus 4620

Sequence ID 2R_DroMel_CAF1
Location 15,110,697 – 15,110,793
Length 96
Max. P 0.586014
window7422

overview

Window 2

Location 15,110,697 – 15,110,793
Length 96
Sequences 4
Columns 96
Reading direction forward
Mean pairwise identity 85.07
Mean single sequence MFE -30.68
Consensus MFE -21.51
Energy contribution -23.07
Covariance contribution 1.56
Combinations/Pair 1.04
Mean z-score -1.56
Structure conservation index 0.70
SVM decision value 0.11
SVM RNA-class probability 0.586014
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15110697 96 + 20766785
AGGAUCUGAUUCAGCAACAGCAGAUCCAUACGCAGGCACAGAAUCGCAUGGGCAAGCACGUGCGUUGGCCAGGUGAUCUGGUGCAAGGUGAACAGG
.(((((((............)))))))...(((..(((((((.((((.(((.(((((....)).))).))).))))))).))))...)))...... ( -36.70)
>DroSec_CAF1 87311 96 + 1
AGGAUCUGGUUCAACAGCAGCAGAACCAAACGCAGGCACAGAAUCGCAUCGGCAAGCAUGUGCGUUGGCCAGGUGAUCUGGUGCAAGGUGCAGAGG
.((.((((.(.(....).).)))).))...(((..(((((((.((((...(((..((....))....)))..))))))).))))...)))...... ( -29.60)
>DroSim_CAF1 70893 96 + 1
AGGAUCUGGUUCAACAGCAGCAGAACCAAACGCAGGCACAGAAUCGCAUCGGCAAGCACGUGCGUUGGCCAGGUGAUUUGGUGCAAGGUGCAGAGG
.((.((((.(.(....).).)))).))...(((..((((.(((((((...(((..((....))....)))..))))))).))))...)))...... ( -31.70)
>DroYak_CAF1 91363 84 + 1
AGGAUCUGAUUCAGCAGCAGCA------------GGCACAGAAUCGCAUAGGCAAACAAGUGCGUUGGCCAGGUGAUAAGGUGCAAGCGGAACAGG
.....(((.(((.((....)).------------.((((...(((((...(((.(((......))).)))..)))))...))))....))).))). ( -24.70)
>consensus
AGGAUCUGAUUCAACAGCAGCAGAACCAAACGCAGGCACAGAAUCGCAUCGGCAAGCACGUGCGUUGGCCAGGUGAUCUGGUGCAAGGUGAACAGG
.((.((((............)))).))...(((..((((...(((((...(((.(((......))).)))..)))))...))))...)))...... (-21.51 = -23.07 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:52 2006