Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,110,398 – 15,110,512 |
Length | 114 |
Max. P | 0.740680 |
Location | 15,110,398 – 15,110,512 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 75.79 |
Mean single sequence MFE | -45.27 |
Consensus MFE | -28.06 |
Energy contribution | -29.23 |
Covariance contribution | 1.18 |
Combinations/Pair | 1.47 |
Mean z-score | -1.46 |
Structure conservation index | 0.62 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.740680 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15110398 114 + 20766785 GUUGGUGGCCACGAUGUGCGGCAAGCCUGCUCCAUUGGAGCGUUAACCCAACAGAUUGCCUGGGAGGAGAGCCACCUUGGCAACUAUAGGCGUAUAAUGCCGCCACGAGAUUCC .((.((((((((...))).((((.(((((((((...)))))...........((.(((((.(((.((....)).))).)))))))..))))......))))))))).))..... ( -40.80) >DroVir_CAF1 130213 114 + 1 GCCGGUGGCGCUGACCUGAAUCAGGCAUGUUCCCUGGGCGCCUUGGCCCAGCAAAUUGCCUGGGAGGAGAGCCAUUUGGGCAACUAUAGACGGAUCAUGCCGCCCACAAAUAGC ....((((.(((((......)))((((((.(((((((((......))))))....(((((..((.((....)).))..)))))........))).))))))))))))....... ( -46.80) >DroGri_CAF1 120525 114 + 1 GCUGGUGGUGCUGAUGUUAGCCAGGCAUGCUCCCUCAGUGCUUUGGCACAGCAGAUUGCCUGGGAGGAGAGUCAUAUGGGCAACUAUCGACGCAUUAUGCCGCCGACAGAUGCC (.((((((((.((((((...(((((((((((......((((....))))))))...))))))).......(((..((((....)))).))))))))))))))))).)....... ( -42.80) >DroEre_CAF1 89943 114 + 1 GCUGGGGGCCACGAUGUGCGGCAAGCCUGCUCCAUUGGGGCGUUAACCCAACAGAUUGCCUGGGAGGAGAGCCAUCUUGGCAACUAUCGGCGUAUAAUGCCGCCUCGGGACUCC .((((((((((.((((.((((....))..((((.(((((.......)))))(((.....)))))))....)))))).))))......((((((...))))))))))))...... ( -46.50) >DroWil_CAF1 154242 114 + 1 GCUGGUGGGACUGAUGCAAAACAGGCGUGUUCCAUUGGAGCAUUGGCCCAGCAAAUCGCUUGGGAGGAGAGCCAUUUGGGUAACUAUCGUCGCAUUAUGCCGCCAAGAGAAUCA ..((((((.(.((((((......((((((((((...)))))))...((((((.....)).))))......)))...(((....))).....))))))).))))))......... ( -37.80) >DroAna_CAF1 91140 114 + 1 GCCGGUGGCAGUGAAGUGCGCCAGACCUGUUCCAUCGGGGCACUCACCCAGCAGAUCGCCUGGGAGGAGAGCCACCUGGGUAACUAUCGGCGCAUCAUGCCGCCGCGCGACUCC ((((((((((.(((..((((((.((...(((((...(((((.(((.((((((.....).)))))..))).))).))..)).)))..))))))))))))))))))).))...... ( -56.90) >consensus GCUGGUGGCACUGAUGUGAGCCAGGCCUGCUCCAUUGGAGCAUUGACCCAGCAGAUUGCCUGGGAGGAGAGCCAUCUGGGCAACUAUCGGCGCAUAAUGCCGCCAAGAGAUUCC ...(((((((.((((((((.........((((.....))))..............(((((((((.((....)).)))))))))......))))))))))))))).......... (-28.06 = -29.23 + 1.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:51 2006