Locus 4617

Sequence ID 2R_DroMel_CAF1
Location 15,097,330 – 15,097,423
Length 93
Max. P 0.531554
window7418

overview

Window 8

Location 15,097,330 – 15,097,423
Length 93
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 82.78
Mean single sequence MFE -32.43
Consensus MFE -16.70
Energy contribution -18.34
Covariance contribution 1.64
Combinations/Pair 1.17
Mean z-score -2.74
Structure conservation index 0.51
SVM decision value -0.00
SVM RNA-class probability 0.531554
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15097330 93 - 20766785
---GUGUGUAUUUGCCUUAACAACUCUUGCAUACAACCUAAAUGGCCCGGGUCUU-------------GGAUCCUGAAUCGCGAGUCCGGAAUCCAGGAUCCUGGCUUC
---(((((((.(((......)))....))))))).........((((.(((((((-------------((((.(((...(....)..))).))))))))))).)))).. ( -34.90)
>DroSec_CAF1 73907 93 - 1
---GUGUGUAUUUGUCUUAACAACUCUUGCAUACAACCUAAAUGGCCCGGGUCUU-------------GGAUCCUGAAUCGCGCGUCCGGAAUCCAGGAUCCUGGCUUC
---(((((((.((((....))))....))))))).........((((.(((((((-------------((((((.((........)).)).))))))))))).)))).. ( -34.70)
>DroSim_CAF1 59766 93 - 1
---GUGUGUAUUUGUCUUAACAACUCUUGCAUACAACCUAAAUGGUCCGGGUCUU-------------GGAUCCUGAAUCGCGCGUCCGGAAUCCAGGAUCCUGGCUUC
---(((((((.((((....))))....))))))).........((((.(((((((-------------((((((.((........)).)).))))))))))).)))).. ( -32.00)
>DroEre_CAF1 74293 93 - 1
---GUGUGUAUUUGUCUUAACAACUCUUGCAUACAAGCUAAAUGGCCCGGCUCUU-------------GGAUCCUGAAUCGCAAGUCCUGGAUUCAGGAUUCCGGCUUC
---(((((((.((((....))))....)))))))..(((....)))((((.((((-------------((((((.....(....)....))))))))))..)))).... ( -30.70)
>DroYak_CAF1 76540 93 - 1
---GUGUGUAUUUGUCUUAACAACUCUUGCAUACAACCUAAAUGGCCCGGGUCUU-------------GGAUCCUGAAUCGCAAGUCCUGAAUCCAGGAUGCCGGCUUC
---(((((((.((((....))))....))))))).........((((.(.(((((-------------((((.(.....(....)....).))))))))).).)))).. ( -29.30)
>DroPer_CAF1 78303 108 - 1
UCUACUUGUAUUUGUCUUAACAACUCUUGCAUACAAUCUAAAUGGCUCUGGCCUGAAAGCGGGUCCCGGGACCCGGCACCCCGGACCCCGGACCCAGG-UCCUGGAUCC
.....((((((((((....)))).......)))))).......(((....))).......((((((.(((..((((....))))..)))((((....)-))).)))))) ( -33.01)
>consensus
___GUGUGUAUUUGUCUUAACAACUCUUGCAUACAACCUAAAUGGCCCGGGUCUU_____________GGAUCCUGAAUCGCGAGUCCGGAAUCCAGGAUCCUGGCUUC
...(((((((.(((......)))....))))))).........((((.(((((((.............((((.(((...(....)..))).))))))))))).)))).. (-16.70 = -18.34 +   1.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:48 2006