Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,092,615 – 15,092,715 |
Length | 100 |
Max. P | 0.574496 |
Location | 15,092,615 – 15,092,715 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 76.84 |
Mean single sequence MFE | -22.76 |
Consensus MFE | -12.01 |
Energy contribution | -11.90 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.10 |
Mean z-score | -1.72 |
Structure conservation index | 0.53 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.574496 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15092615 100 + 20766785 GCCGCCCCGCGCCAUCGCCGCCGCCAACUGGCAUGCAUUUUGUUUUGCCAUUUUAUGGCCAUCAUCAAAAGCGCAUUAAAAUUUUACUAAGGCGU-CGUGC ........((((...((((...(((....)))((((.(((((....(((((...)))))......)))))..))))..............)))).-.)))) ( -28.10) >DroSec_CAF1 69273 87 + 1 GCCU-------------UCGCCGCCGACUGGCAUGCAUUUUGUUUUGCCAUUUUAUGGCCAUCAUCAAAAGCGCAUUAAAAUUUUACUAAGGCGU-CGUGC (((.-------------.(((((((....)))((((.(((((....(((((...)))))......)))))..))))..............)))).-.).)) ( -23.90) >DroSim_CAF1 47212 87 + 1 GCCU-------------UCGCCGCCGACUGGCAUGCAUUUUGUUUUGCCAUUUUAUGGCCAUCAUCAAAAGCGCAUUAAAAUUUUACUAAGGCGU-CGUGC (((.-------------.(((((((....)))((((.(((((....(((((...)))))......)))))..))))..............)))).-.).)) ( -23.90) >DroWil_CAF1 124664 91 + 1 CCUU----UUUCCAGAGGCGAUG-----CCCCAUGCAUUUUGUUUUGCCAUUUUAUGGCCAUCAUCAAAAGCGCAUUAAAAUUUUACUAAGGCGU-UACCA ....----........((..(((-----((..((((.(((((....(((((...)))))......)))))..))))(((....)))....)))))-..)). ( -19.90) >DroMoj_CAF1 113437 84 + 1 GCCG-------------GCACC----GCCCACAUGCAUUUUGUUUGGCCAUUUUAUGGCCAUCAUCAAAAGCGCAUUAAAAUUUUACUAAGGCAGGCACCC ((((-------------((...----)))...((((.(((((..(((((((...)))))))....)))))..))))..............)))........ ( -24.50) >DroAna_CAF1 71383 100 + 1 GCCAAGCCAAGCCAGCCAAACACCCUCUUGCCAUGCAUUUUGUUUUGCCGUUUUAUGGCCAUCAUCAAAAGCGCAUUAAAAUUUUACUAAGGCGU-CAUGC (((..(.((((...............)))).)((((.(((((....(((((...)))))......)))))..))))..............)))..-..... ( -16.26) >consensus GCCU_____________GCGCCGCC_ACUGGCAUGCAUUUUGUUUUGCCAUUUUAUGGCCAUCAUCAAAAGCGCAUUAAAAUUUUACUAAGGCGU_CAUGC (((.............................((((.(((((....(((((...)))))......)))))..))))(((....)))....)))........ (-12.01 = -11.90 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:46 2006