Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,069,540 – 15,069,636 |
Length | 96 |
Max. P | 0.706718 |
Location | 15,069,540 – 15,069,636 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 80.76 |
Mean single sequence MFE | -23.30 |
Consensus MFE | -11.83 |
Energy contribution | -12.98 |
Covariance contribution | 1.16 |
Combinations/Pair | 1.21 |
Mean z-score | -2.46 |
Structure conservation index | 0.51 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.706718 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15069540 96 + 20766785 ACAUCUAAUGUUUGCUAAUCCCGCACUGCAUUUAUGCAGAUGCCGUGUUGAA--CCAUUCAUUGGAUCAAAGGCCAUUUGGUACACAUUAAUCGCAUC .....((((((.((((((.......(((((....)))))..(((...((((.--(((.....))).)))).)))...)))))).))))))........ ( -27.00) >DroSec_CAF1 46491 96 + 1 ACAUCUAAUGUUUGCUAAUCCCGCACUGCAUUUAUGCAGAUGCCGUGUUGAA--CCAUUCAUUGGAUCAAAGGCCAUUUGGUACACAUUUAUCGCAUC ......(((((.((((((.......(((((....)))))..(((...((((.--(((.....))).)))).)))...)))))).)))))......... ( -25.10) >DroSim_CAF1 24257 96 + 1 ACAUCUAAUGUUUGCUAAUCCCGCACUGCAUUUAUGCAGAUGCCGUGCUGAA--CCAUUCAUUGGAUCAAAGGCCAUUUGGUACACAUUUAUCGCAUC ......(((((.((((((..((((((.((((((....)))))).))))(((.--(((.....))).)))..))....)))))).)))))......... ( -26.20) >DroEre_CAF1 46544 96 + 1 ACUUGUAAUGUUUACUAAUCUCGCACUGCAUUUAUGCAGAUGCCGUGUUCAA--CCAUUCAUUGGAUCAAAGGCCAUUCGGCACACAUUUAUCGCAUC ...((..(((............((((((((....))))).))).((((....--(((.....))).......(((....)))))))...)))..)).. ( -21.70) >DroYak_CAF1 47587 98 + 1 ACAUCUAAUGUUCACUAAUCUCGCACUGCAUUUAUGCAGAUGCUGUGUUCAGCAUCAUUCAUUGGCUCAAAGGCCAUUCGGUACACAUUUAUCGCAUC ......(((((..(((..........((((....))))(((((((....)))))))......(((((....)))))...)))..)))))......... ( -22.60) >DroPer_CAF1 49713 81 + 1 GUCUCUAAUGGCCAGCAAUCA----C---AU---UACUGAUGCC-----GAU--CCAUUCAUGAGGCCAACUGCCACUUGCAGCACAAUUACCGCAUC (((((.(((((.(.(((.(((----.---..---...)))))).-----)..--)))))...)))))...((((.....))))............... ( -17.20) >consensus ACAUCUAAUGUUUACUAAUCCCGCACUGCAUUUAUGCAGAUGCCGUGUUGAA__CCAUUCAUUGGAUCAAAGGCCAUUUGGUACACAUUUAUCGCAUC ...(((((((............((((.(((((......))))).))))...........)))))))......(((....)))................ (-11.83 = -12.98 + 1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:42 2006