Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,068,899 – 15,068,998 |
Length | 99 |
Max. P | 0.500000 |
Location | 15,068,899 – 15,068,998 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 89.77 |
Mean single sequence MFE | -25.92 |
Consensus MFE | -19.87 |
Energy contribution | -20.23 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.05 |
Mean z-score | -2.59 |
Structure conservation index | 0.77 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15068899 99 - 20766785 UGGCCCUUAUCGUAUCCGGCACACGCAUAAAAGUUGGCCGAGUGUUUGCAAAUUU-UUUU---GCUCCUCGCUUCGCUCUC----UUUCAACUUU---UUUAUUGGGCCC- .(((((............((....))..((((((((((.(((((...(((((...-.)))---))....))))).))....----...)))))))---).....))))).- ( -28.01) >DroSec_CAF1 45854 100 - 1 UGGCCCUUAUCGUAUCCGGCACACGCAUAAAAGUUGGCCGAGUGUUUGCAAAUUUUUUUU---GCUCCUCGCUUCGCUCUC----UUUAAACUUU---UUUAUUGGGCCC- .(((((............((....))...((((..(((.(((((...(((((.....)))---))....))))).)))..)----))).......---......))))).- ( -28.50) >DroSim_CAF1 23609 99 - 1 UGGCCCUUAUCGUAUCCGGCACACGCAUAAAAGUUGGCCGAGUGUUUGCAAAUUU-UUUU---GCUCCUCGCUUCGCUCUC----UUUCAACUUU---UUUAUUGGGCCC- .(((((............((....))..((((((((((.(((((...(((((...-.)))---))....))))).))....----...)))))))---).....))))).- ( -28.01) >DroEre_CAF1 45903 98 - 1 UGGCCCUUAUCAUUUCCGGCACACGCAUAAAAGUUGGCCGAGUGUUUGCAAAUUU-UUUU---GCUCC-UGCUUCGCUCUC----UUUCAACUUU---UUUAUUGGGCCC- .(((((............((....))..(((((((((..(((((...(((((...-.)))---))...-.....)))))..----..))))))))---).....))))).- ( -26.80) >DroYak_CAF1 46907 107 - 1 UGGCCCUUAUCGUUUCCGGCACACGCAUAAAAGUUGGCCGAGUGUUUGCAAAUUU-UUUUUGUGCUUCUCGCUUCGCUCUCUCUUUUUUAACUUU---UUUAUUGGGCCCC .(((((...........(((.((.((......)))))))(((((...(((((...-..)))))((.....))..)))))................---......))))).. ( -25.10) >DroAna_CAF1 47237 102 - 1 UGGCUCUUAUCGUAUCCGGCACACGCAUAAAAGUUGGCCGAGUGUUUGCAAAUUU-UUUC---CUUCUGCUCGUCGCUCGU----UUUUAACUUUUUUUUUAUUGGAACC- ..............((((((....))..(((((((((.((((((...(((.....-....---....)))....)))))).----..))))))))).......))))...- ( -19.12) >consensus UGGCCCUUAUCGUAUCCGGCACACGCAUAAAAGUUGGCCGAGUGUUUGCAAAUUU_UUUU___GCUCCUCGCUUCGCUCUC____UUUCAACUUU___UUUAUUGGGCCC_ .(((((...........(((.((.((......)))))))(((((...((.....................))..))))).........................))))).. (-19.87 = -20.23 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:41 2006