| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,022,058 – 15,022,165 |
| Length | 107 |
| Max. P | 0.743936 |
| Location | 15,022,058 – 15,022,165 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.02 |
| Mean single sequence MFE | -22.02 |
| Consensus MFE | -6.32 |
| Energy contribution | -9.48 |
| Covariance contribution | 3.16 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.29 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.743936 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15022058 107 + 20766785 UUUUGUGUGCAAACACGAAAAGUCCAUAGA-------------AUAUCAUAGCUACUGGCAUUCAUUAAUUUCGCCAUAAAUAAAAAUGUUUGCAAAAUUGAUGUCUGUAUUCAUCUAUA ((((((((....))))))))..........-------------.....((((......(((..(((((((((.((...(((((....))))))).)))))))))..)))......)))). ( -20.40) >DroSec_CAF1 9949 107 + 1 UUUUGUGUGCAAACACGAAAAGUUCAUAGA-------------AUACUAUAGCUACUGGCAUUCAUUAAUUUCGCAAUAAAUAAAAGUUUUUUCAAAAUUGAUGUCUGUAUUCACCUAUA ((((((((....))))))))........((-------------((((....((.....))...(((((((((.(.((.((((....)))).))).)))))))))...))))))....... ( -20.00) >DroSim_CAF1 7936 107 + 1 UUUUGUGUGCAAACACGAAAAGUUCAUAGA-------------AUACUAUAGCUACUGGCAUUCAUUAAUUUCGCAAUAAAUAAAAGUUUUUGCAAAAUUGAUGUCUGUAUUCACCUAUA ((((((((....))))))))........((-------------((((....((.....))...(((((((((.((((.((((....)))))))).)))))))))...))))))....... ( -25.50) >DroEre_CAF1 9312 107 + 1 UUUUGUGCGCAGACAUGAAAAGUUUAUAGAAGGUAAAAC----AUUCCGUAGCCACUGGCAUUCAUUAAUUUCGCCAUAAAUAAAAGUUU---------UGAUGUCUGUGCUCACCUAUA ...((.((((((((((.((((.(((......(((...((----.....)).)))..((((.............))))......))).)))---------).)))))))))).))...... ( -28.52) >DroYak_CAF1 9275 103 + 1 UUUUGUGUGCAAACAGGAAUGGGUUAUAGAAGUUAAAACCUGAAUACCAUAGCCA--------CAUUAAUUUCGACAUAAAUAAAAGUUC---------UGCUGUCUGUAUUCACCAAUA ...((.(((((.((((.((((((((((.(...(((.....)))...).)))))).--------))))......(((..........))).---------..)))).))))).))...... ( -15.70) >consensus UUUUGUGUGCAAACACGAAAAGUUCAUAGA_____________AUACCAUAGCUACUGGCAUUCAUUAAUUUCGCCAUAAAUAAAAGUUUUU_CAAAAUUGAUGUCUGUAUUCACCUAUA ((((((((....))))))))............................((((......(((..(((((((((......((((....)))).....)))))))))..)))......)))). ( -6.32 = -9.48 + 3.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:36 2006