Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,006,406 – 15,006,510 |
Length | 104 |
Max. P | 0.875560 |
Location | 15,006,406 – 15,006,510 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 81.73 |
Mean single sequence MFE | -36.87 |
Consensus MFE | -25.55 |
Energy contribution | -25.55 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.32 |
Mean z-score | -2.50 |
Structure conservation index | 0.69 |
SVM decision value | 0.89 |
SVM RNA-class probability | 0.875560 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15006406 104 - 20766785 AACUGGUACCGAUGGAUCGGUGGCCCUGUACAAUCGACAGGGCCAACUGGUGCAGCGCAUCAUACUUUCUGGGUGAGCUAUGCUCAAUCUCUACGUAAUAAUGA---- ...((((..((.((.((((((((((((((.......)))))))).)))))).)).)).))))(((.....(..(((((...)))))..).....))).......---- ( -34.60) >DroSec_CAF1 760 104 - 1 AACUGGAACCGAUGGAUCGGUGGCCUUGUACAAUCGGCAGGGCCAACUGGUGCAUCGCAUCAUACUUUCUGGGUGAGCUAUGCUCAAUCCCAAUGUAAUAAUGA---- .....((..(((((.((((((((((((((.......)))))))).)))))).)))))..)).(((....(((((((((...)))))..))))..))).......---- ( -40.30) >DroSim_CAF1 760 104 - 1 AACUGGAACCGAUGGAUCGGUGGCCCUGUACAAUCGGCAGGGCCAACUGGUGCAGCGCAUCAUACUUUCUGGGUGAGCUAUGCUCAAUACCAAUGUAAUAAUGA---- .....((..((.((.((((((((((((((.......)))))))).)))))).)).))..)).(((....(((.(((((...)))))...)))..))).......---- ( -37.20) >DroEre_CAF1 757 100 - 1 AACUGGAACCGACGGAUCGGUGGCCCUGUACAAUCGGCAGGGCCAACUGGUGCAGCGCAUCAUACUUUCGGGGUGAGCUAAGUCCGAUCCCAAUGCAAUA-------- ....(((.(.((((.((((((((((((((.......)))))))).)))))).)(((.((((...(....).)))).)))..))).).)))..........-------- ( -37.90) >DroYak_CAF1 1432 100 - 1 AACUGGAACCGAUGGAUCAGUGGCCCUGUACAAUCGGCAGGGCCAACUGGUGCAGCGCAUCAUACUGUCGGGGUGAGCUAAACCCGAAACCAAUGUAAUA-------- ...(((...((.((.((((((((((((((.......)))))))).)))))).)).))..........(((((..........)))))..)))........-------- ( -38.00) >DroPer_CAF1 760 105 - 1 UACAGGUACAGAUGGAUCUGUGGCGUUGUACAAUCGCCAGGGACAACUGGUGCAGCGCAUUAUCCUCGCAGGGUAAGACCAGCCCC---CAUAAGUUGUACUCAAAAU ....(((((((((((..(((.((((((((......(((((......)))))))))))).((((((.....))))))..))))...)---)))...)))))))...... ( -33.20) >consensus AACUGGAACCGAUGGAUCGGUGGCCCUGUACAAUCGGCAGGGCCAACUGGUGCAGCGCAUCAUACUUUCUGGGUGAGCUAAGCCCAAUCCCAAUGUAAUAAUGA____ ...(((...((.((.((((((((((((((.......)))))))).)))))).)).)).............((((.......))))....)))................ (-25.55 = -25.55 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:30 2006