Locus 4603

Sequence ID 2R_DroMel_CAF1
Location 15,002,529 – 15,002,623
Length 94
Max. P 0.641566
window7398

overview

Window 8

Location 15,002,529 – 15,002,623
Length 94
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 73.86
Mean single sequence MFE -20.93
Consensus MFE -9.63
Energy contribution -9.13
Covariance contribution -0.50
Combinations/Pair 1.32
Mean z-score -1.82
Structure conservation index 0.46
SVM decision value 0.22
SVM RNA-class probability 0.641566
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15002529 94 + 20766785
UGGAGGUGAGAAUGGGAAUGAUAUCUAAAUAA---AUAAACGGUUCUGAUUAUCUUCAAAUAAAAA-U-AAGAAAGUUCUUACGUUCGGGAAACUGGGA
(((((((((((((.(.................---.....).)))))...))))))))........-(-((((....)))))..(((((....))))). ( -17.35)
>DroPse_CAF1 2299 96 + 1
UGGAGGUGAGAAUAGGGAUAAUGUCUGGAAAGGCAAUGAAA-AUUUCAAUCAAAUCCCAAUACAAU-U-GACUCCAUUCUUACGCUCUGGAAACUGGGA
.((((((((((((.(((((..(((((....))))).(((..-...))).....)))))....(...-.-).....)))))))).))))(....)..... ( -26.00)
>DroSec_CAF1 923 94 + 1
UGGAGGUGAGAAUGGGAAUGAUAUCUGAAUAA---AAACAUGGUUGUAUACAUCUUCAAAUAAGAA-U-AAGAAAGUUCUUACGUUCGGGAAACUGGGA
((((((((....(.(((......))).)....---..(((....)))...))))))))..((((((-(-......)))))))..(((((....))))). ( -20.20)
>DroEre_CAF1 1024 96 + 1
UGGAGGUGAGAAUGGGAAUGAUAUCUGAAUAA---AUACACUGUUGUGAUUCAAUACAAAUAUCAAAAAACGAAAGCACUUACGUUCCGGAAACUGGGA
.(((((((((........((((((.((.((.(---((.(((....))))))..)).)).)))))).....(....)..))))).))))(....)..... ( -18.40)
>DroYak_CAF1 518 95 + 1
UGGAGGUGAGAAUGGGAAUGAUAUCUGUAAUA---AUAAACUCUUGUGAAUAUGUACAAAUAUAAA-UAAAGAAUGCUCUUACGUUCCGGAAACUGGGA
.((((((((((..(......((((.((((...---....((....)).......)))).))))...-.......)..)))))).))))(....)..... ( -15.23)
>DroPer_CAF1 559 96 + 1
UGGAGGUGAGAAUAGGGAUAAUGUCUGGAAAGGCAAUGAAA-AUUUCAAUCAAAUCCCAAUACAAU-U-GACUCCAUUCUUACGCUCGGGAAACUGGGA
.....((((((((.(((((..(((((....))))).(((..-...))).....)))))....(...-.-).....)))))))).(((((....))))). ( -28.40)
>consensus
UGGAGGUGAGAAUGGGAAUGAUAUCUGAAAAA___AUAAAC_GUUGUAAUCAAAUACAAAUAAAAA_U_AAGAAAGUUCUUACGUUCGGGAAACUGGGA
..(((((((((((.(((......)))..........((((....))))...........................)))))))).))).(....)..... ( -9.63 =  -9.13 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:29 2006