Locus 4601

Sequence ID 2R_DroMel_CAF1
Location 14,998,180 – 14,998,282
Length 102
Max. P 0.769690
window7396

overview

Window 6

Location 14,998,180 – 14,998,282
Length 102
Sequences 6
Columns 116
Reading direction forward
Mean pairwise identity 76.94
Mean single sequence MFE -21.17
Consensus MFE -15.09
Energy contribution -15.03
Covariance contribution -0.05
Combinations/Pair 1.13
Mean z-score -1.22
Structure conservation index 0.71
SVM decision value 0.53
SVM RNA-class probability 0.769690
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14998180 102 + 20766785
UAAAUAACU--------CAACUUUUUUAUUGAUC------UUCAGGCACCAGCAUUGGCUUCAAGAACAUUGCGUCGCGCAUUGCUUUUGACCUCAAGCUGUGACUUAACCAAACG
........(--------(((........))))..------...((((((.(((.((((..((((((.((.((((...)))).)).))))))..)))))))))).)))......... ( -20.90)
>DroGri_CAF1 13788 107 + 1
UUACUAUUUCAGUAAAUAAA----UUUAUUGUAC-----UUACAGGUACUAGCAUUGGCUUCAAAAACAUUGCGUCUCGCAUUGCUUUUGAUCUUCGUCUGUGACUUAACCAAACG
.........(((((((....----)))))))...-----.....(((...(((((.(((.((((((.((.((((...)))).)).)))))).....))).))).))..)))..... ( -20.30)
>DroSec_CAF1 16153 101 + 1
UAAAUAACU--------CAACUG-UUUAUUAAUC------UCCAGGCACCAGCAUUGGCUUCAAGAACAUUGCGUCGCGCAUUGCUUUUGAACUCAAGCUGUGACUUAACCAAACG
((((((...--------....))-))))......------...((((((.(((.(((..(((((((.((.((((...)))).)).)))))))..))))))))).)))......... ( -22.50)
>DroWil_CAF1 30885 98 + 1
UUAAUGAUG--------AAUCCA-UU--UU-CGU------UUUAGGCACCAGCAUUGGCUUCAAGAACAUUGCGUCCCGCAUUGCUUUUGACCUACGGCUGUGACUUAACCAAACA
.....((((--------((....-..--))-)))------)((((((((.(((...((..((((((.((.((((...)))).)).))))))))....)))))).)))))....... ( -24.10)
>DroMoj_CAF1 25533 105 + 1
UUAUUAAUUGUUU-----------UUUAUUACACCAUCUGCGCAGGUACUAGCAUUGGCUUCAAAAACAUUGCGUCUCGCAUUGCUUUUGAUCUCCGUCUGUGACUUGACAAAACG
.............-----------.................((((((....(((.(((..((((((.((.((((...)))).)).))))))...)))..))).))))).)...... ( -19.10)
>DroAna_CAF1 27443 102 + 1
UUAAUAAUUU------UAAACCU-UUUGUU-CUC------UUCAGGCACCAGCAUCGGCUUCAAGAACAUUGCGUCUCGCAUUGCUUUUGACCUCCGGCUGUGACUUAACCAAACG
..........------.......-......-...------...((((((.(((..(((..((((((.((.((((...)))).)).))))))...))))))))).)))......... ( -20.10)
>consensus
UUAAUAAUU________AAAC___UUUAUU_CUC______UUCAGGCACCAGCAUUGGCUUCAAGAACAUUGCGUCUCGCAUUGCUUUUGACCUCCGGCUGUGACUUAACCAAACG
...........................................((((((.(((...((..((((((.((.((((...)))).)).))))))..))..)))))).)))......... (-15.09 = -15.03 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:27 2006