Locus 460

Sequence ID 2R_DroMel_CAF1
Location 2,622,780 – 2,622,871
Length 91
Max. P 0.582427
window879

overview

Window 9

Location 2,622,780 – 2,622,871
Length 91
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 86.21
Mean single sequence MFE -30.78
Consensus MFE -24.30
Energy contribution -25.42
Covariance contribution 1.12
Combinations/Pair 1.20
Mean z-score -1.98
Structure conservation index 0.79
SVM decision value 0.10
SVM RNA-class probability 0.582427
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2622780 91 - 20766785
GAAAUCAAUGCGGUGUGUGGGCGACUGGAGAUCUCGGCAAU-GCCAUUUGGUAAUUGUCCAGGUCC-AG-----ACCCAAGUUGCCACAAUUUGGUAA
........(((.(..(((((.(((((((.(((((.((((((-(((....))).)))))).))))).-..-----..)).))))))))))...).))). ( -30.70)
>DroSec_CAF1 57441 91 - 1
GAAAUCAAUGCGGUGUGUGGGCGUCUGGAGAUCUCGGCAAU-GCCAUUUGGUAAUUGUCCAGGUCC-AG-----ACCCAAGUUGCCACAAUUUGGCAA
....((((((.((((....((.(((((((..(((.((((((-(((....))).)))))).))))))-))-----))))....)))).))..))))... ( -31.10)
>DroSim_CAF1 54906 92 - 1
GAAAUCAAUGCGGUGUGUGGGCGACUGGAGAUCUCGGCAAU-GCCAUUUGGUAAUUGUCCAGGUCCGAG-----ACCCAAGUUGCCACAAUUUGGCAA
........(((.(..(((((.(((((((.(.((((((....-(((...(((.......)))))))))))-----)))).))))))))))...).))). ( -32.60)
>DroEre_CAF1 56563 91 - 1
GAAAUCAAUGCUUUGUGUGGGCGACUGGAGAUCUCGGCAAU-UCCACUUGGUGAUUGUCCAGGUCU-AG-----ACCCAAGUUGCCACAAUUUGGCAA
........((((...(((((.(((((((((((((.((((((-(((....)).))))))).))))))-..-----..)).))))))))))....)))). ( -34.70)
>DroYak_CAF1 54763 96 - 1
GAAAUCAAUGCGUUGUGUGGGCGACUGGAGAUCUAGGCAAU-GCCACUUGGUAGUUGUCCAGGUCC-AGGUCUAACCCAAGUUGCCACAAUUUGGCCA
.........((....(((((.(((((((((((((.(((...-)))((((((.......))))))..-))))))...)).)))))))))).....)).. ( -30.00)
>DroAna_CAF1 56362 86 - 1
CAAAUCAAUUCGGUGUGUGGGCAGCUCGAGAUGUCUGCAAUUACGAUUUGGUAAUGGUCGAGCUC------------GGAGUUGCCACAAUUUGGCAA
.........((((..(((((.(((((((((...((.((.(((((......))))).)).)).)))------------.)))))))))))..))))... ( -25.60)
>consensus
GAAAUCAAUGCGGUGUGUGGGCGACUGGAGAUCUCGGCAAU_GCCAUUUGGUAAUUGUCCAGGUCC_AG_____ACCCAAGUUGCCACAAUUUGGCAA
........(((.(..(((((.(((((((.(((((.((((((.(((....))).)))))).)))))...........)).))))))))))...).))). (-24.30 = -25.42 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:09 2006