Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,297,457 – 1,297,576 |
Length | 119 |
Max. P | 0.864136 |
Location | 1,297,457 – 1,297,576 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 72.34 |
Mean single sequence MFE | -22.56 |
Consensus MFE | -13.40 |
Energy contribution | -14.90 |
Covariance contribution | 1.50 |
Combinations/Pair | 1.19 |
Mean z-score | -1.77 |
Structure conservation index | 0.59 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.864136 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1297457 119 + 20766785 UGCUGUUAUCGGUUCCUUCUCUUUCCAUUGACUAAGGUUCUCAGUUUUUA-UGUAUUGUACUAUGUAUGUUUUCCGACGAGAAAUUUUGAUUUCAGCACUUAGAUCUGGUCCCGGAUUCG (((((..(((((..((((.((........))..))))(((((.(((...(-(((((........)))))).....))))))))...)))))..)))))....((((((....)))))).. ( -24.90) >DroSec_CAF1 25473 92 + 1 UGCUGUUAUCGGUUCUUUCUCUUUCCAUUGACUAAGGUUCUUGGUUUGUA-UGAAUUC-------UAUGUUUUCCGACGAGGAAUUUCGAUUUCAGCACU-------------------- (((((..(((((...((((((....(((.(((((((...)))))))...)-)).....-------...(((....)))))))))..)))))..)))))..-------------------- ( -24.40) >DroSim_CAF1 29671 92 + 1 UGCUGUUAUCGGUUCUUUCUCUUUCCAUUGACUAAGGUUCUUAGUUUGUA-UGAAUUG-------UAUGUUUUCCGUCGAGGAAUUUCGAUUUCAGCACU-------------------- (((((..(((((...((((((....(((.(((((((...)))))))...)-))....(-------.(((.....))))))))))..)))))..)))))..-------------------- ( -23.50) >DroEre_CAF1 34302 113 + 1 UUCGGUUAUCGGUUCCCUCUCUUCCCCUUGACUGCGGUUCUUUGUUUUUUUUUUAUAU-------UAUGUAGUCCUACGAGGCAUUUCCAUUUCAGCACUCAGAUCCAGCCCCGGAUUCG (((((.....((((...(((.........(((((((......................-------..)))))))....(((((............)).))))))...))))))))).... ( -17.46) >consensus UGCUGUUAUCGGUUCCUUCUCUUUCCAUUGACUAAGGUUCUUAGUUUGUA_UGAAUUG_______UAUGUUUUCCGACGAGGAAUUUCGAUUUCAGCACU____________________ (((((..(((((...((((((........(((((((...)))))))......................(((....)))))))))..)))))..)))))...................... (-13.40 = -14.90 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:24:39 2006