| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,985,476 – 14,985,596 |
| Length | 120 |
| Max. P | 0.641855 |
| Location | 14,985,476 – 14,985,596 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 84.78 |
| Mean single sequence MFE | -38.10 |
| Consensus MFE | -29.59 |
| Energy contribution | -28.52 |
| Covariance contribution | -1.08 |
| Combinations/Pair | 1.34 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.641855 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14985476 120 - 20766785 GGCAGGUGUUUCGCUAGUUUCACCUUGGCAAAAUUGCCCUUGCCGAUCGUCUUUAUGAGUUUGUAUUUGCCAAUAUGCUCCUCAGUAGCACGCCAUCGCAUAGGAGCACUACUCCGCAUU ((((((((...(....)...))))..((((....))))..))))((((((((...((((...((((........))))..))))..)).)))..)))((...((((.....))))))... ( -31.60) >DroVir_CAF1 18 120 - 1 GGUAGAUGCUUUGCCAGUUUUACUUUGGCAAAGUUUCCCUUUCCGAUCGUCUUGAUGAGCUUGUAUUUGCCGAUAUGCUCCUCAGUGGCGCGCCAUCGCAUCGGAGCACUGCUGCGCAUC (((((..((((((((((.......))))))))))......(((((((.(((((((.((((.(((........))).)))).)))).)))(((....))))))))))..)))))....... ( -40.70) >DroGri_CAF1 22 120 - 1 GGCAGAUGCUUUGCUAGCUUUACUUUAGCAAAGUUACCCUUGCCGAUGGUCUUAAUGAGCUUAUAUUUCCCGAUAUGCUCCUCAGUGGCGCGCCAUCGCAUCGGAGCACUGCUGCGCAUC (((((..((((((((((.......)))))))))).....)))))((((........((((.(((........))).))))(.(((..(.((.((........)).)).)..))).))))) ( -37.10) >DroWil_CAF1 12748 120 - 1 GGCAAAUGUUUGGCCAAUUUUACUUUGGCAAAAUUACCCUUUCCGAUCGUCUUUAUGAGUUUAUAUUUGCCAAUGUGCUCUUCGGUGGCGCGCCAUCGUAUUGGAGCGCUACUUCUCAUU (((((((((...(((((.......))))).................((((....))))....)))))))))...(((((((.((((((....))))))....)))))))........... ( -37.80) >DroMoj_CAF1 10605 120 - 1 GGCAGAUGCUUUGCUAGUUUCACUUUGGCAAAGUUUCCCUUUCCGAUCGUCUUGAUGAGCUUAUAUUUUCCGAUAUGCUCCUCAGUGGCACGCCAUCGCAUCGGAGCACUGCUUCGCAUC (((((..((((((((((.......))))))))))......(((((((((...(((.((((.(((........))).)))).)))((((....)))))).)))))))..)))))....... ( -38.00) >DroAna_CAF1 14734 120 - 1 GGCAGGUGCUUCGCCAGUUUCACCUUGGCGAAGUUGCCUUUUCCAAUCGUCUUGAUGAGUUUGUAUUUGCCGAUGUGCUCCUCCGUGGCCCGCCAUCGCAUGGGGGCGCUACUCCGCAUC (((((((((((((((((.......))))))))).))))........((((....)))).........))))((((((.......(((((((.((((...)))).)).)))))..)))))) ( -43.40) >consensus GGCAGAUGCUUUGCCAGUUUCACUUUGGCAAAGUUACCCUUUCCGAUCGUCUUGAUGAGCUUAUAUUUGCCGAUAUGCUCCUCAGUGGCGCGCCAUCGCAUCGGAGCACUACUCCGCAUC (((((((((((((((((.......))))))))))............((((....))))......)))))))....((((((.(.((((....)))).)....))))))............ (-29.59 = -28.52 + -1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:23 2006