Locus 4596

Sequence ID 2R_DroMel_CAF1
Location 14,981,033 – 14,981,144
Length 111
Max. P 0.898059
window7387 window7388

overview

Window 7

Location 14,981,033 – 14,981,144
Length 111
Sequences 4
Columns 111
Reading direction forward
Mean pairwise identity 92.94
Mean single sequence MFE -22.47
Consensus MFE -18.42
Energy contribution -18.55
Covariance contribution 0.13
Combinations/Pair 1.12
Mean z-score -2.31
Structure conservation index 0.82
SVM decision value 1.00
SVM RNA-class probability 0.898059
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14981033 111 + 20766785
CAUUGAAUUCCUAUAAUCCAUAUGGAAACUAAUAUAUAUUUUCAGUCUAAUCGCACAAGUGCUACAUAAAAACCCAACGCAAAUACGUUUAAAGAUUAGGGGAUUAUAGGG
.........((((((((((....(....)................((((((((((....))).............((((......))))....))))))))))))))))). ( -27.40)
>DroSim_CAF1 11632 111 + 1
CAUUGAAUUCCUAUAAUCCAUAUGGAAACUAAUAUAUAUUUUCAGUCUAAUCAAAAAAGUGCUACAUAAAAACCCAAUGCAAAUACGUUUAAAGAUUAGGGGAUAAUAGGG
.........(((((.((((....(....)................((((((((((....(((................)))......)))...))))))))))).))))). ( -18.09)
>DroEre_CAF1 11455 111 + 1
CAUUGAAUUCCUAUAAUCCAUAUGGAAACUAAUAUAUAUUUUCAGUCUAAUCACACAAAUGCUACAUUAAAACCAAUUGAAAAUACGUUUAAAGAUUAGGGGAUUAUAGGG
.........((((((((((....(....)................(((((((....(((((.....((((......)))).....)))))...))))))))))))))))). ( -22.20)
>DroYak_CAF1 11132 111 + 1
CAUUGAAUUCCUAUAAUCCAUAUGGAAACUAAUAUAUAUUUUCAGUCUAAUCACGCAAAUGCUACAUUAAACCCCGAUGCAAAUACGUUUGAAGAUUAGGGAAUUAUAGGG
.........((((((((((....(....).................((((((...((((((...((((.......))))......))))))..)))))))).)))))))). ( -22.20)
>consensus
CAUUGAAUUCCUAUAAUCCAUAUGGAAACUAAUAUAUAUUUUCAGUCUAAUCACACAAAUGCUACAUAAAAACCCAAUGCAAAUACGUUUAAAGAUUAGGGGAUUAUAGGG
.........((((((((((....(....)................(((((((......(((...)))........((((......))))....))))))))))))))))). (-18.42 = -18.55 +   0.13)

alignment

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secondary structure

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dotplot

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Window 8

Location 14,981,033 – 14,981,144
Length 111
Sequences 4
Columns 111
Reading direction reverse
Mean pairwise identity 92.94
Mean single sequence MFE -23.32
Consensus MFE -19.08
Energy contribution -20.07
Covariance contribution 1.00
Combinations/Pair 1.09
Mean z-score -1.69
Structure conservation index 0.82
SVM decision value 0.22
SVM RNA-class probability 0.639350
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14981033 111 - 20766785
CCCUAUAAUCCCCUAAUCUUUAAACGUAUUUGCGUUGGGUUUUUAUGUAGCACUUGUGCGAUUAGACUGAAAAUAUAUAUUAGUUUCCAUAUGGAUUAUAGGAAUUCAAUG
.((((((((((.((((((....(((((....))))).............(((....)))))))))(((((.........)))))........))))))))))......... ( -27.70)
>DroSim_CAF1 11632 111 - 1
CCCUAUUAUCCCCUAAUCUUUAAACGUAUUUGCAUUGGGUUUUUAUGUAGCACUUUUUUGAUUAGACUGAAAAUAUAUAUUAGUUUCCAUAUGGAUUAUAGGAAUUCAAUG
.(((((.((((.((((((...(((.((..((((((.........)))))).)).)))..))))))(((((.........)))))........)))).)))))......... ( -19.40)
>DroEre_CAF1 11455 111 - 1
CCCUAUAAUCCCCUAAUCUUUAAACGUAUUUUCAAUUGGUUUUAAUGUAGCAUUUGUGUGAUUAGACUGAAAAUAUAUAUUAGUUUCCAUAUGGAUUAUAGGAAUUCAAUG
.((((((((((..............(......)...(((..((((((((..((((..((......))...)))).))))))))...)))...))))))))))......... ( -21.30)
>DroYak_CAF1 11132 111 - 1
CCCUAUAAUUCCCUAAUCUUCAAACGUAUUUGCAUCGGGGUUUAAUGUAGCAUUUGCGUGAUUAGACUGAAAAUAUAUAUUAGUUUCCAUAUGGAUUAUAGGAAUUCAAUG
.((((((((((.((((((.....(((((..(((..((........))..)))..)))))))))))(((((.........)))))........))))))))))......... ( -24.90)
>consensus
CCCUAUAAUCCCCUAAUCUUUAAACGUAUUUGCAUUGGGUUUUAAUGUAGCACUUGUGUGAUUAGACUGAAAAUAUAUAUUAGUUUCCAUAUGGAUUAUAGGAAUUCAAUG
.((((((((((.((((((..((((.((...(((((.........))))))).))))...))))))(((((.........)))))........))))))))))......... (-19.08 = -20.07 +   1.00)

alignment

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secondary structure

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dotplot

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Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:20 2006