Locus 4592

Sequence ID 2R_DroMel_CAF1
Location 14,975,072 – 14,975,192
Length 120
Max. P 0.923599
window7377

overview

Window 7

Location 14,975,072 – 14,975,192
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 98.33
Mean single sequence MFE -46.40
Consensus MFE -45.99
Energy contribution -46.05
Covariance contribution 0.06
Combinations/Pair 1.03
Mean z-score -2.28
Structure conservation index 0.99
SVM decision value 1.16
SVM RNA-class probability 0.923599
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14975072 120 + 20766785
CGACAACGCCAGUCGCCAACACUAACACAAUGAUGCCCAUUGUAACGUCCUCGAAUUCGGCCACCAGCAAUAGCACUGCGGCCACGCCCACGCCGGCCUCGGGGGCGGCAGCGACAGGUG
......((((.(((((..........((((((.....))))))..(((((((((..(((((.....((....))...(((....)))....)))))..)))))))))...))))).)))) ( -47.50)
>DroSim_CAF1 5749 120 + 1
CGACAACGCCAGUCGCCAACACCAACACAAUGAUGCCCAUUGUAACGUCCUCGAAUUCGGCCACCAGCAAUAGCACUGCGGCCACGCCCACGCCUGCCUCGGGGGCGGCAGCGACAGGUG
......((((.(((((..........((((((.....))))))..(((((((((....((((..(((........))).))))..((....)).....)))))))))...))))).)))) ( -43.20)
>DroEre_CAF1 5403 120 + 1
CGACAACGCCAGUCGCCAACACCAACACAAUGAUGCCCAUUGUAACGUCCUCGAAUUCGGCUACCAGCAAUAGCACUGCGGCCACGCCCACGCCGGCCUCGGGGGCGGCAGCGACAGGUG
......((((.(((((..........((((((.....))))))..(((((((((..(((((.....((....))...(((....)))....)))))..)))))))))...))))).)))) ( -47.90)
>DroYak_CAF1 5062 120 + 1
CGACAACGCCAGUCGCCAACACCAACACAAUGAUGCCCAUUGUAACGUCCUCGAAUUCGGCCACCAGCAAUAGUACUGCGGCCACGCCCACGCCGGCCUCGGGGGCGGCAGCGACAGGUG
......((((.(((((..........((((((.....))))))..(((((((((..(((((.....(((.......)))(((...)))...)))))..)))))))))...))))).)))) ( -47.00)
>consensus
CGACAACGCCAGUCGCCAACACCAACACAAUGAUGCCCAUUGUAACGUCCUCGAAUUCGGCCACCAGCAAUAGCACUGCGGCCACGCCCACGCCGGCCUCGGGGGCGGCAGCGACAGGUG
......((((.(((((..........((((((.....))))))..(((((((((..(((((.....((....))...(((....)))....)))))..)))))))))...))))).)))) (-45.99 = -46.05 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:10 2006