Locus 4590

Sequence ID 2R_DroMel_CAF1
Location 14,973,051 – 14,973,171
Length 120
Max. P 0.888282
window7372

overview

Window 2

Location 14,973,051 – 14,973,171
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 93.47
Mean single sequence MFE -40.17
Consensus MFE -35.53
Energy contribution -36.28
Covariance contribution 0.75
Combinations/Pair 1.11
Mean z-score -1.91
Structure conservation index 0.88
SVM decision value 0.95
SVM RNA-class probability 0.888282
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14973051 120 - 20766785
AGCAGAGGAUUGUCAUAGUAUAGUCCACGGACGGUGAAACUUCCUCCGCGGACUUGCAAUCGGUGCACCCGGGAGAGCAUGUAAAUCAGCACGCAAAAGCUAUGGCGACUUCCGCGAUUA
.((.((((.((((((((((...((((.((((.((........)))))).))))((((..((((.....))))....((.((.....))))..))))..)))))))))))))).))..... ( -44.40)
>DroSim_CAF1 3796 120 - 1
AGCAGAGGAUUGUCAUAGUAUAGUCCACGAACGGUGAAACUUCCUCCGCGGACUUGCAAUCGGUGCACCCGGGAGAGCAUGUAAAUCAGCACGCAAAAGCUGUGACGACUUCCGCGAUUA
.((.((((.((((((((((......(((.....))).......((((.(((...((((.....)))).))))))).((.(((......))).))....)))))))))))))).))..... ( -39.20)
>DroEre_CAF1 3398 120 - 1
AGCAGAGGAUUGUCAUAGUAUAGUCCACGGACCGUGAAGCUACCUCCGUGGACUUGCAAUCGGUGCACCCGGGAGAGCAUGUAAAUCAGCAAGCAAAAGCUAUGGCGACUUCCACGAUUA
....((((.((((((((((...(((((((((..(((....))).)))))))))((((..((((.....))))....((.((.....))))..))))..))))))))))))))........ ( -41.60)
>DroYak_CAF1 3095 120 - 1
AGCAGGGGAUUGUCAUAGUAUAGUCCACGGACGGUGAAGCUUCCUCCACGGACUUGCAAUCGGUGUACACGGGAGAGCAUGUAAAUCAGCAAACAAAAGCUAUGGCGACUUCCGUGAUUA
.((((((((((((......)))))))..(((.((........))))).....)))))..........((((((((.((.((.....))))........((....))..)))))))).... ( -35.50)
>consensus
AGCAGAGGAUUGUCAUAGUAUAGUCCACGGACGGUGAAACUUCCUCCGCGGACUUGCAAUCGGUGCACCCGGGAGAGCAUGUAAAUCAGCAAGCAAAAGCUAUGGCGACUUCCGCGAUUA
.((.((((.((((((((((...((((.((((.((........)))))).))))((((..((((.....))))....((.((.....))))..))))..)))))))))))))).))..... (-35.53 = -36.28 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:05 2006