Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,619,607 – 2,619,704 |
Length | 97 |
Max. P | 0.795980 |
Location | 2,619,607 – 2,619,704 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 86.23 |
Mean single sequence MFE | -30.13 |
Consensus MFE | -24.27 |
Energy contribution | -25.05 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.14 |
Mean z-score | -2.39 |
Structure conservation index | 0.81 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.795980 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2619607 97 - 20766785 CUCUUUGAGUGGCCAUCAAAUCUGGCCAAUUGUUCUUCAAUAUCGCUGAGCUGGAUAUCGUCGGCAAUGGCCUGGUUGAAGUAGCAGUUGGCCUUCC- ...(((((.......)))))...((((((((((((((((((...(((..(((((......)))))...)))...))))))).)))))))))))....- ( -35.70) >DroPse_CAF1 62437 97 - 1 CUCUUUGAGUGGCCAUCAAACCUAGCCAAUUGUUCUUCAAUAUCGCUUAGCUGGAUAUCGUCGGCAAUGGCCUUAUUGAAAUAACAGAACGUAUCCU- .........((((...........))))...(((((((((((..(((..(((((......)))))...)))..))))))......))))).......- ( -20.80) >DroEre_CAF1 53462 98 - 1 CUCUUUGAGUGGCCAUCAAACCUGGCCAAUUGUUCUUCAAUAUCGCUAAGCUGGAUAUCGUCAGCAAUGGCCUUGUUGAAGUAGCAGUGGGCCUCCCU ...(((((.......)))))...((((.((((((((((((((..((((.(((((......)))))..))))..)))))))).)))))).))))..... ( -34.50) >DroWil_CAF1 73495 97 - 1 UGCUGCUGCUGCCCAUCAAUUCUGGCCAAUUGUUCUUCAAUAUCGCUUAACUGUAUAUCAUCAGCAAUGGCCAUAUUGAAAUAGCAGAAAAUAUCCC- .....((((((....(((((..((((((.(((((.....((((.((......))))))....))))))))))).)))))..))))))..........- ( -24.00) >DroYak_CAF1 51736 97 - 1 CUCUUUGAGUGGCCAUCAAACCUGGCCAAUUGUUCUUCAAUAUCGCUGAGCUGGAUAUCGUCGGCAAUGGCCUUGUUGGAGUAGCAGUGGGCCUCCC- ...(((((.......)))))...((((.((((((((((((((..(((..(((((......)))))...)))..)))))))).)))))).))))....- ( -32.50) >DroAna_CAF1 53330 97 - 1 CUCUUUGAGUGGCCAUCAAACCUGGCCAAUUGUUCUUCAAUAUCGCUAAGCUGGAUAUCAUCGGCAAUGGCCUUGUUGAAGUAGCAGUGGGCCUCUC- ...(((((.......)))))...((((.((((((((((((((..((((.(((((......)))))..))))..)))))))).)))))).))))....- ( -33.30) >consensus CUCUUUGAGUGGCCAUCAAACCUGGCCAAUUGUUCUUCAAUAUCGCUAAGCUGGAUAUCGUCGGCAAUGGCCUUGUUGAAGUAGCAGUGGGCCUCCC_ .........((((((.......))))))((((((((((((((..(((..(((((......)))))...)))..)))))))).)))))).......... (-24.27 = -25.05 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:08 2006