Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,971,100 – 14,971,217 |
Length | 117 |
Max. P | 0.590890 |
Location | 14,971,100 – 14,971,217 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.50 |
Mean single sequence MFE | -34.05 |
Consensus MFE | -32.29 |
Energy contribution | -33.85 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.03 |
Mean z-score | -1.52 |
Structure conservation index | 0.95 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.590890 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14971100 117 + 20766785 UGGACGGAGGAAAAUAGUAAUAUUUAACUGCGUUGCGGGAGCGGGACAAUCGUCGUUUGCCAAUUGCGGCCACCGCUUAUGUCGGCUAAUCGGCUAUCAAU---AAUAUUAGUAAUCGUA ..((((.((..(((((....)))))..)).))))(((((((((((((....)))....(((......)))..)))))).((..((((....))))..))..---...........)))). ( -33.50) >DroSim_CAF1 989 117 + 1 UGGACGGAGGAAAAUAGUAAUAUUUAACUGCGUUGCGUGAGCGGGACAAUCGUCGUUUGCCAAUUGCGGCCACCGCUUAUGUCGGCUAAUCGGCUAUCAAU---AAUAUUAGUAAUCGUA ..((((.((..(((((....)))))..)).))))(((((((((((((....)))....(((......)))..)))))))))).((((....))))......---................ ( -35.10) >DroEre_CAF1 1412 119 + 1 UAGACGGAGGAAAAUAGUAAUAUUUAACUGCGUUGCGUGAGCGGGACAAUCGUCGUUUGCCAAUUGCGGCCACCGUUUAUGUCGGCUAAUCGGCUAUCAAUA-UAAUAAUAGUAAUCGUA ..((((.((..(((((....)))))..)).))))(((((((((((((....)))....(((......)))..)))))))))).((((....)))).......-................. ( -32.60) >DroYak_CAF1 1111 120 + 1 UAGACGGAGGAAAAUAGUAAUAUUUAACUGCGUUGCGUGAGCGGGACAAUCGUCGUUUGCCAAUUGCGGCCACCGCUUAUGUCGGCUAAUCGGCUAUCAAUAAUAAUAAUAGUAAUCGUA ..((((.((..(((((....)))))..)).))))(((((((((((((....)))....(((......)))..)))))))))).((((....))))......................... ( -35.00) >consensus UAGACGGAGGAAAAUAGUAAUAUUUAACUGCGUUGCGUGAGCGGGACAAUCGUCGUUUGCCAAUUGCGGCCACCGCUUAUGUCGGCUAAUCGGCUAUCAAU___AAUAAUAGUAAUCGUA ..((((.((..(((((....)))))..)).))))(((((((((((((....)))....(((......)))..)))))))))).((((....))))......................... (-32.29 = -33.85 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:51 2006