Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,617,953 – 2,618,111 |
Length | 158 |
Max. P | 0.994880 |
Location | 2,617,953 – 2,618,052 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 75.52 |
Mean single sequence MFE | -29.18 |
Consensus MFE | -23.00 |
Energy contribution | -23.01 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.11 |
Mean z-score | -1.97 |
Structure conservation index | 0.79 |
SVM decision value | 2.52 |
SVM RNA-class probability | 0.994880 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2617953 99 + 20766785 UUUGUUCCCUCGUCCACGUUCCAUCCGCCCGUCUUCAUUUCCAUU--------------CCGGGGCAAACGGAUGGAUUUCAUGAGAGGGGCCUUACCCGAUUACCACAUUUU ...(..(((((........((((((((((((..............--------------.)))).....))))))))........)))))..).................... ( -27.95) >DroSim_CAF1 50116 113 + 1 UUUGUUCCCUCGUCCACGUUUCAUCCGCCCGUCUUCAUUUCCAUUGGCUGACCAUCAGCCCGGGGCACACGGAUGGAUUUCAUGAGAGGGGCCUUACCCGAUUACCACAUUUU ...(..(((((........((((((((((((....).........(((((.....)))))..))))....)))))))........)))))..).................... ( -33.19) >DroYak_CAF1 50087 93 + 1 UUUAUUCCCUCGUCCACGUUCCAUCCGCC--------------------GACUAUCUGCCCGGGGAACGCGGAUGGAUUUCAUUAGAGGGUCUGCACCCGAUUACCACAUUUU ......(((((........(((((((((.--------------------.....(((....)))....)))))))))........)))))....................... ( -26.39) >consensus UUUGUUCCCUCGUCCACGUUCCAUCCGCCCGUCUUCAUUUCCAUU____GAC_AUC_GCCCGGGGCACACGGAUGGAUUUCAUGAGAGGGGCCUUACCCGAUUACCACAUUUU ...(..(((((........((((((((((((.............................)))).....))))))))........)))))..).................... (-23.00 = -23.01 + 0.00)
Location | 2,617,953 – 2,618,052 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 75.52 |
Mean single sequence MFE | -32.63 |
Consensus MFE | -22.53 |
Energy contribution | -23.42 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.04 |
Mean z-score | -1.78 |
Structure conservation index | 0.69 |
SVM decision value | 1.43 |
SVM RNA-class probability | 0.952886 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2617953 99 - 20766785 AAAAUGUGGUAAUCGGGUAAGGCCCCUCUCAUGAAAUCCAUCCGUUUGCCCCGG--------------AAUGGAAAUGAAGACGGGCGGAUGGAACGUGGACGAGGGAACAAA ....................(..((((((((((...((((((((.....((((.--------------.((....)).....)))))))))))).)))))..)))))..)... ( -31.70) >DroSim_CAF1 50116 113 - 1 AAAAUGUGGUAAUCGGGUAAGGCCCCUCUCAUGAAAUCCAUCCGUGUGCCCCGGGCUGAUGGUCAGCCAAUGGAAAUGAAGACGGGCGGAUGAAACGUGGACGAGGGAACAAA ....................(..((((((((((..((((..((((.(.((...(((((.....)))))...))......).))))..))))....)))))..)))))..)... ( -36.60) >DroYak_CAF1 50087 93 - 1 AAAAUGUGGUAAUCGGGUGCAGACCCUCUAAUGAAAUCCAUCCGCGUUCCCCGGGCAGAUAGUC--------------------GGCGGAUGGAACGUGGACGAGGGAAUAAA ..............((((....))))..........(((.((((((((((((((((.....)))--------------------..)))..))))))))))....)))..... ( -29.60) >consensus AAAAUGUGGUAAUCGGGUAAGGCCCCUCUCAUGAAAUCCAUCCGUGUGCCCCGGGC_GAU_GUC____AAUGGAAAUGAAGACGGGCGGAUGGAACGUGGACGAGGGAACAAA ....................(..((((((((((...((((((((.....((((.............................)))))))))))).)))))..)))))..)... (-22.53 = -23.42 + 0.89)
Location | 2,618,014 – 2,618,111 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 79.03 |
Mean single sequence MFE | -28.63 |
Consensus MFE | -22.40 |
Energy contribution | -21.15 |
Covariance contribution | -1.25 |
Combinations/Pair | 1.30 |
Mean z-score | -1.31 |
Structure conservation index | 0.78 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.780590 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2618014 97 - 20766785 CGUUGUGUUACCACAUUAGCA-GCGCACUCAUAGGUGGUCAUUAGACUGCGGGCUUGGUGAAAAUGUGGUAAUCGGGUAA-GGCCCCUCUCAUGAAAUC ..(..((((((((((((..((-.((..(((....(..(((....)))..))))..)).))..))))))))))..(((...-..)))....))..).... ( -29.00) >DroSec_CAF1 52753 81 - 1 CGUUGUGUUACCACAUUAGCA-GCGCACUCAUAGGUGGUCAUUAGACUGCGGGCCAGGUGAAAAUGUGGUAAUCGGGUA-----------------AUC ..(((.(((((((((((..((-.(...(((....(..(((....)))..))))...).))..))))))))))))))...-----------------... ( -24.00) >DroSim_CAF1 50191 97 - 1 CGUUGUGUUACCACAUUACCA-GCGCACUCAUAGGUGGUCAUUAGACUGCGGGCCAGGUGAAAAUGUGGUAAUCGGGUAA-GGCCCCUCUCAUGAAAUC ..(..(((((((((((((((.-((.(.(.....)(..(((....)))..)).))..)))))...))))))))..(((...-..)))....))..).... ( -28.40) >DroEre_CAF1 51901 83 - 1 CGUUCUGUUGCCACAUUAGCG-GCGCACUCAUAGGUGGUCAUUAGACUGCGGGCCAGGUGAAAAUGUGGUAAU---------------CUAAUGAAAUC ((((..(((((((((((.(((-((.(.(.....)(..(((....)))..)).)))..))...)))))))))))---------------..))))..... ( -27.10) >DroYak_CAF1 50142 97 - 1 CGUUCUGUUACCACAUUAGCG-GCGCACUCAUAGGUGGUCAUUAGACUGCGGGCCAGGUGAAAAUGUGGUAAUCGGGUGC-AGACCCUCUAAUGAAAUC .............((((((.(-(.((((((....(..(((....)))..)..((((.((....)).))))....))))))-....)).))))))..... ( -32.00) >DroPer_CAF1 67846 87 - 1 CGGUUUGUUGCCACAUUAGCAGGCGGCCUCAUAGCCGGUCAUUAUGCUGGUGGCUAAGUGAAAAUGUGGCAAUCAGGUAGAGGCCC------------C ..((((((((......))))))))((((((...((((((......)))))).((((.((....)).)))).........)))))).------------. ( -31.30) >consensus CGUUGUGUUACCACAUUAGCA_GCGCACUCAUAGGUGGUCAUUAGACUGCGGGCCAGGUGAAAAUGUGGUAAUCGGGUA__GGCCC__CU_AUGAAAUC ......(((((((((((..((.((.(.(.....)((((((....))))))).))....))..))))))))))).......................... (-22.40 = -21.15 + -1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:07 2006