Locus 4579

Sequence ID 2R_DroMel_CAF1
Location 14,961,540 – 14,961,633
Length 93
Max. P 0.585088
window7343

overview

Window 3

Location 14,961,540 – 14,961,633
Length 93
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 89.17
Mean single sequence MFE -20.92
Consensus MFE -14.58
Energy contribution -15.98
Covariance contribution 1.40
Combinations/Pair 1.08
Mean z-score -1.99
Structure conservation index 0.70
SVM decision value 0.10
SVM RNA-class probability 0.585088
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14961540 93 - 20766785
GGUUUCCCACACGCGAUUUUCAUGAAGCUGGAGUGUAAG-UUUUUUGUUUUUAUUCAAAACUUAAAAAUCCACUUUGCAUGUGUCAUAAAUAAU
.......((((.(((.....)..((((.((((...((((-((((..((....))..))))))))....)))))))))).))))........... ( -18.10)
>DroSec_CAF1 1440 92 - 1
GGUUUCCCACACACGAUUUUCAUGAAGGUGGAGUGUGAG-UUUUUUGUUUUUAUUCAAAACUUCAAAAUCCACUUUGCAUGUGUCAUAAAU-AU
((....))......(((...((((((((((((...((((-((((..((....))..))))).)))...)))))))).)))).)))......-.. ( -22.90)
>DroSim_CAF1 1649 92 - 1
GGUUUCCCACACACGAUUUUCAUGAAGGUGGAGUGUGAG-UUUUUUGUUUUUAUUCAAAACUUCAAAAUCCACUUUGCAUGUGUCAUAAAU-AU
((....))......(((...((((((((((((...((((-((((..((....))..))))).)))...)))))))).)))).)))......-.. ( -22.90)
>DroEre_CAF1 1534 91 - 1
AGUUUCCCACACACGAUUUCCAUGAAGGUGGGUUGUGU---CUUUUGUUUUUAUUCGAAACUUCAAAAUCCACUUUGCAUGUGUCAUAAAUAAU
..............(((...((((((((((((((.((.---.(((((........)))))...)).)))))))))).)))).)))......... ( -20.50)
>DroYak_CAF1 1720 94 - 1
AGUUUCCCACACACGAUUCCCAAGACGGUGGGCUAGGUGCUUUUUUGUUUUUAUUCAAAACUUCAAAAUCCACUUAGCAUGUGUCAUAAGUAAU
........(((((......(((......)))((((((((..((((.(((((.....)))))...))))..)))))))).))))).......... ( -20.20)
>consensus
GGUUUCCCACACACGAUUUUCAUGAAGGUGGAGUGUGAG_UUUUUUGUUUUUAUUCAAAACUUCAAAAUCCACUUUGCAUGUGUCAUAAAUAAU
..............(((...((((((((((((...((((...(((((........))))).))))...)))))))).)))).)))......... (-14.58 = -15.98 +   1.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:37 2006