Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,952,690 – 14,952,785 |
Length | 95 |
Max. P | 0.986678 |
Location | 14,952,690 – 14,952,785 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 78.51 |
Mean single sequence MFE | -27.30 |
Consensus MFE | -21.02 |
Energy contribution | -21.40 |
Covariance contribution | 0.38 |
Combinations/Pair | 1.08 |
Mean z-score | -2.26 |
Structure conservation index | 0.77 |
SVM decision value | 2.05 |
SVM RNA-class probability | 0.986678 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14952690 95 - 20766785 AAUUUGAUAUGGCAAGAAUGCAUAUACAAUUAGGAGCACCCCGCCACUUUUGAUAUGCAGGUGCUCUUGCGGACAAACCAACAUAUCCAAGUUAA---------------------- (((((((((((((((((.(((((((.(((..((..((.....))..)).)))))))))).....))))))((.....))..))))).))))))..---------------------- ( -28.70) >DroSec_CAF1 30008 117 - 1 CAUUUGAUAUGGCAAGAAUGCACAUACAUUUAGGAGCACCCCGCCACUUUUUAUAUGCAGGUGCUCUUGCGGACAAACGAACAUAUUCAAGUAAAUUUUGCGAAUAAAUAAACUUCA .(((((((((((((....))).........((((((((((..((............)).))))))))))((......))..)))).))))))......................... ( -24.30) >DroSim_CAF1 12182 117 - 1 CAUUUGAUAUGGCAAGAAUGCACAUACAUUUAGGAGCACCCCGCCACUUCUGAUAUGCAGGUGCUCUUGCGGACAAACGAACAUAUGCAAGUUAAUUUUGCGAAUAAAUAAACUUCA .((((((((((((((((..((((...((((((((((..........))))))).)))...))))))))))(......)...)))))(((((.....)))))...)))))........ ( -27.30) >DroYak_CAF1 11831 110 - 1 CAUUUGAUAUGGUAACAAUGCAUAUGUGCAGUGGAGCACCCCGCCAAUUUUGAUAUGCAGGUGCUCUUGCGGACAAACAAACAUAUGUAAUU-------ACGAGUAAAUAAACUAGA .(((((...(.((((...((((((((((((..((((((((..((............)).)))))))))))(......)..))))))))).))-------)).).)))))........ ( -28.90) >consensus CAUUUGAUAUGGCAAGAAUGCACAUACAUUUAGGAGCACCCCGCCACUUUUGAUAUGCAGGUGCUCUUGCGGACAAACGAACAUAUGCAAGUUAA____GCGAAUAAAUAAACUUCA .(((((((((((((....))).........((((((((((..((............)).))))))))))............))))).)))))......................... (-21.02 = -21.40 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:29 2006