| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,934,158 – 14,934,276 |
| Length | 118 |
| Max. P | 0.542051 |
| Location | 14,934,158 – 14,934,276 |
|---|---|
| Length | 118 |
| Sequences | 3 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 81.48 |
| Mean single sequence MFE | -21.75 |
| Consensus MFE | -15.56 |
| Energy contribution | -15.56 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.542051 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14934158 118 + 20766785 UAUGGCCGAAUAACAAUUCAAUUUGAUUUAAUAACACCUUUCUUCGAUGCGCUCAGGUGAUCUUGCACAUUUCACUUGCCACGCACAAUUGCAGUCUAAUGAAAUUGGCCAAUAAAUG ..(((((((....(((......))).........((.....((.(((((((..(((((((...........)))))))...))))...))).)).....))...)))))))....... ( -24.00) >DroSim_CAF1 20260 89 + 1 UAUGGCCGAAUAACAAUUCAAUUUGAUUUAAUAACACCUUUCCUCGAUGCGCUCAGGUGAUCUUGCACAUUUCA-----------------------------AUUGGCCAAUAAAUG ..(((((((....(((......))).........(((((...............)))))...............-----------------------------.)))))))....... ( -16.16) >DroYak_CAF1 20587 115 + 1 UAUGGCCGAAUAACAAUUCAAUUUAAUUUAAUAACACCUUUCUUCGAUGCGCUCAGGUGAUCUUGCACAUUUCACUUGCCACGCACAAUUGCAGAC---UGAAAUUGGCCAAUAAAUA ..(((((((((....))))..................(..(((.(((((((..(((((((...........)))))))...))))...))).))).---.).....)))))....... ( -25.10) >consensus UAUGGCCGAAUAACAAUUCAAUUUGAUUUAAUAACACCUUUCUUCGAUGCGCUCAGGUGAUCUUGCACAUUUCACUUGCCACGCACAAUUGCAG_C___UGAAAUUGGCCAAUAAAUG ..(((((((((....))))...............(((((...............)))))...............................................)))))....... (-15.56 = -15.56 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:18 2006