Locus 457

Sequence ID 2R_DroMel_CAF1
Location 2,612,237 – 2,612,328
Length 91
Max. P 0.559094
window874

overview

Window 4

Location 2,612,237 – 2,612,328
Length 91
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 78.99
Mean single sequence MFE -20.13
Consensus MFE -9.84
Energy contribution -10.28
Covariance contribution 0.45
Combinations/Pair 1.24
Mean z-score -2.05
Structure conservation index 0.49
SVM decision value 0.05
SVM RNA-class probability 0.559094
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2612237 91 - 20766785
CAGAUAGGCCAGGUGAUUAAAAGGUCCAAUAAAGAAGGUAAUUAGGGAGC---GAAUUUAAUUUCUUUGUUGGCUUAACUGAAUGAAGUGGUUA
......(((((..(.(((...(((.((((((((((((..((((.(....)---.))))...))))))))))))))).....))).)..))))). ( -22.90)
>DroSec_CAF1 46961 91 - 1
CAGAUAAGCCAGGUGUUUAAAAGGGCCAAUAAAGAAGGUAAUUAGGAAGC---GAAUUUAAUUUCUUUGUUGGCUUAACUGAAUGAAGGGGUUU
.....(((((...((((((...(((((((((((((((..((((.(....)---.))))...)))))))))))))))...))))))....))))) ( -26.40)
>DroSim_CAF1 44428 91 - 1
CAGAUAAGCCAGGUGAUUAAAUGGGCCAAUAAAGGAGGUAAUUAGGGAGC---GAAUUUAAUUUCUUUGUUGGCUUAACUGAAUGAAGGGGAGA
........((...(.(((...((((((((((((((((..((((.(....)---.))))...))))))))))))))))....))).)...))... ( -23.70)
>DroEre_CAF1 45981 91 - 1
CAGAUAAGCCAGGUGAUUAAAAGAGGCAAUAAAGCAGGCAAUUAGGGAAC---GAGUUUAAUUUGUUUGUUGGCUUAACUGUACAAAGUUGUUA
(((.((((((((..........(..((......))...).......((((---((((...)))))))).)))))))).)))............. ( -18.10)
>DroYak_CAF1 44086 91 - 1
CAGAUAAGCCAGGUGAUUAAAAGGGCCAAUAAAGAGGGCAAUUAGAGAAC---GAAUUUAAUUGGUUUGUUGGCUUAACUGUACGAAUUUGUUA
(((.((((((.(((..........)))....((.(((.((((((((....---...)))))))).))).)))))))).)))............. ( -20.60)
>DroPer_CAF1 60686 79 - 1
CAGAUAAGCCAGGUGAUUAUAAAUGCUAAUAAAGGAGGUAAUUACGGGAUACUAUAUUUAAUUUGUUUUAUGU-UUAAUU--------------
........((..((((((((...(.((.....)).).)))))))).)).........................-......-------------- (  -9.10)
>consensus
CAGAUAAGCCAGGUGAUUAAAAGGGCCAAUAAAGAAGGUAAUUAGGGAAC___GAAUUUAAUUUCUUUGUUGGCUUAACUGAAUGAAGUGGUUA
(((.((((((((............(((.........)))(((((((..........)))))))......)))))))).)))............. ( -9.84 = -10.28 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:04 2006