| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,932,255 – 14,932,355 |
| Length | 100 |
| Max. P | 0.577869 |
| Location | 14,932,255 – 14,932,355 |
|---|---|
| Length | 100 |
| Sequences | 3 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 96.71 |
| Mean single sequence MFE | -20.57 |
| Consensus MFE | -20.03 |
| Energy contribution | -20.37 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.97 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.577869 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14932255 100 + 20766785 AAAAUGAAA--AAAGAAAUGGAAACCGAAGUUGGUCUUCGGUUUGGUUCAAUGACCCAUUUAUGAAAGUGCUAGAUGAAGGCAAAACAAUCCAAUCUUCGUU ..((((((.--....(((((.(((((((((.....)))))))))((((....))))))))).......((((.......)))).............)))))) ( -21.50) >DroSim_CAF1 18367 100 + 1 AAAAUGAAA--AAAGAAAUGAAAACCGAAGUUGGUCUUCGGUUUGGUUCAAUGACCCAUUUAUGAAAGUGCUAGAUGAAGGCAAAACAAUCCAAUCUUCGUU ..((((((.--....(((((.(((((((((.....)))))))))((((....))))))))).......((((.......)))).............)))))) ( -21.20) >DroYak_CAF1 18714 102 + 1 AAAAUGAAAAAAAAGAAAUGAAAACCGAAGUUGGUCUUCGGUUUGGUUCAAUGACCCAUUUAUGAAAGUGCUAGAUGAAGGCAAUACAAUCCAAUCUUCUUU ...........(((((((((.(((((((((.....)))))))))((((....))))))))........((((.......))))..............))))) ( -19.00) >consensus AAAAUGAAA__AAAGAAAUGAAAACCGAAGUUGGUCUUCGGUUUGGUUCAAUGACCCAUUUAUGAAAGUGCUAGAUGAAGGCAAAACAAUCCAAUCUUCGUU ..((((((.......(((((.(((((((((.....)))))))))((((....))))))))).......((((.......)))).............)))))) (-20.03 = -20.37 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:16 2006