Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,930,131 – 14,930,221 |
Length | 90 |
Max. P | 0.985606 |
Location | 14,930,131 – 14,930,221 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 89.76 |
Mean single sequence MFE | -30.40 |
Consensus MFE | -29.35 |
Energy contribution | -29.85 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.65 |
Structure conservation index | 0.97 |
SVM decision value | 1.06 |
SVM RNA-class probability | 0.908715 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14930131 90 + 20766785 CUGUUUCCGUGGUGUAGCGGUUAUCACAUCUGCCUAACACGCAGAAGGCCCCCGGUUCGAUCCCGGGCGGAAACAUGU-G-----UCUUUUU--UUU---U .(((((((((((((.......)))))).(((((.......)))))..((((..((......)).)))))))))))...-.-----.......--...---. ( -28.60) >DroVir_CAF1 26358 88 + 1 CUGUUUCCGUGGUGUAGCGGUUAUCACAUCUGCCUAACACGCAGAAGGCCCCCGGUUCGAUCCCGGGCGGAAACAUGUCA-----AAUUUUU--U------ .(((((((((((((.......)))))).(((((.......)))))..((((..((......)).))))))))))).....-----.......--.------ ( -28.60) >DroYak_CAF1 16485 94 + 1 CUGUUUCCGUGGUGUAGCGGUUAUCACAUCUGCCUAACACGCAGAAGGCCCCCGGUUCGAUCCCGGGCGGAAACAGGUUG-----ACUUUUU--UUUGGUA ((((((((((((((.......)))))).(((((.......)))))..((((..((......)).))))))))))))....-----.......--....... ( -31.80) >DroAna_CAF1 16484 98 + 1 CUGUUUCCGUGGUGUAGCGGUUAUCACAUCUGCCUAACACGCAGAAGGCCCCCGGUUCGAUCCCGGGCGGAAACAGGUCGAAAUAACUUUUUUAUUU---U ((((((((((((((.......)))))).(((((.......)))))..((((..((......)).))))))))))))...(((((((.....))))))---) ( -32.60) >consensus CUGUUUCCGUGGUGUAGCGGUUAUCACAUCUGCCUAACACGCAGAAGGCCCCCGGUUCGAUCCCGGGCGGAAACAGGUCG_____ACUUUUU__UUU___U ((((((((((((((.......)))))).(((((.......)))))..((((..((......)).))))))))))))......................... (-29.35 = -29.85 + 0.50)
Location | 14,930,131 – 14,930,221 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 89.76 |
Mean single sequence MFE | -30.60 |
Consensus MFE | -29.60 |
Energy contribution | -29.60 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.11 |
Structure conservation index | 0.97 |
SVM decision value | 2.01 |
SVM RNA-class probability | 0.985606 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14930131 90 - 20766785 A---AAA--AAAAAGA-----C-ACAUGUUUCCGCCCGGGAUCGAACCGGGGGCCUUCUGCGUGUUAGGCAGAUGUGAUAACCGCUACACCACGGAAACAG .---...--.......-----.-...(((((((((((((.......)))))((......(((.((((.((....))..)))))))....)).)))))))). ( -29.70) >DroVir_CAF1 26358 88 - 1 ------A--AAAAAUU-----UGACAUGUUUCCGCCCGGGAUCGAACCGGGGGCCUUCUGCGUGUUAGGCAGAUGUGAUAACCGCUACACCACGGAAACAG ------.--.......-----.....(((((((((((((.......)))))((......(((.((((.((....))..)))))))....)).)))))))). ( -29.70) >DroYak_CAF1 16485 94 - 1 UACCAAA--AAAAAGU-----CAACCUGUUUCCGCCCGGGAUCGAACCGGGGGCCUUCUGCGUGUUAGGCAGAUGUGAUAACCGCUACACCACGGAAACAG .......--.......-----....((((((((((((((.......)))))((......(((.((((.((....))..)))))))....)).))))))))) ( -31.50) >DroAna_CAF1 16484 98 - 1 A---AAAUAAAAAAGUUAUUUCGACCUGUUUCCGCCCGGGAUCGAACCGGGGGCCUUCUGCGUGUUAGGCAGAUGUGAUAACCGCUACACCACGGAAACAG .---.....................((((((((((((((.......)))))((......(((.((((.((....))..)))))))....)).))))))))) ( -31.50) >consensus A___AAA__AAAAAGU_____CGACAUGUUUCCGCCCGGGAUCGAACCGGGGGCCUUCUGCGUGUUAGGCAGAUGUGAUAACCGCUACACCACGGAAACAG ..........................(((((((((((((.......)))))((......(((.((((.((....))..)))))))....)).)))))))). (-29.60 = -29.60 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:12 2006