Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,923,363 – 14,923,465 |
Length | 102 |
Max. P | 0.568767 |
Location | 14,923,363 – 14,923,465 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 77.15 |
Mean single sequence MFE | -32.53 |
Consensus MFE | -22.53 |
Energy contribution | -20.98 |
Covariance contribution | -1.55 |
Combinations/Pair | 1.44 |
Mean z-score | -1.05 |
Structure conservation index | 0.69 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.568767 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14923363 102 + 20766785 AAAUUCCCUUGGAUUGGUUCCUGCAGGCACAAACUGGAGUGGAUCUUCUAUCCUCACUGGCGUUGAGUGGGUGGGGGAACCCUCAGCCACCCACUGUCAUAU------- ..........((((.(((((((.(((.......))).)).)))))....))))....(((((.((.((((.(((((....))))).)))).)).)))))...------- ( -37.10) >DroPse_CAF1 10425 101 + 1 AAACUCCUUGGUAUUCGUCCCACAUGGCACAAACUGCAGCGGAUCUUCGAUCCUCACGGGCGUCGAAUGGGUGGGUGAACCCUCAGCGACCCACUUUGAAG-------- ...............(((((......(((.....))).(.(((((...))))).)..)))))((((((((((.(.(((....))).).))))).)))))..-------- ( -30.20) >DroGri_CAF1 12087 104 + 1 AAACUCCUUGGUUGUGGUUCCAACUGGCACAAAUUGCAAUGGAUCCUCGAUCCGCACCGGCGUUGAGUGGGUGGGCGAACCUUCGGCUACCCACUUU-----AUAUGGU .........(((((.((.((((....(((.....)))..)))).)).)))))...((((..((.((((((((((.(((....))).)))))))))).-----)).)))) ( -39.80) >DroWil_CAF1 11920 102 + 1 AAAUUCCUUGGUUGUGGUUCCAGCUGGCACAAAUUGUAAUGGAUCUUCGAUCCGUACUGGCGUUGAAUGGGUGGGUGAACCCUCGGCGACCCACUACAAGUU------- ......((((...((((.((..((..(.((.....)).(((((((...))))))).)..))(((((..((((......))))))))))).))))..))))..------- ( -32.70) >DroAna_CAF1 10111 96 + 1 GAACUCUCUCGUAUUAGUUCCGGCAGGCACAAACUGGAGUGGAUCUUCUAUCCUCACUGGCGUAGAGUGGGUCGGAGAACCCUCAGCCACCCACU------U------- ......((((((..(((((((((..........)))))(.((((.....)))).)))))))).)))((((((..(((....)))....)))))).------.------- ( -25.20) >DroPer_CAF1 10389 101 + 1 AAACUCCUUGGUAUUCGUCCCACAUGGCACAAACUGCAGCGGAUCUUCGAUCCUCACGGGCGUCGAAUGGGUGGGUGAACCCUCAGCGACCCACUUUGAAG-------- ...............(((((......(((.....))).(.(((((...))))).)..)))))((((((((((.(.(((....))).).))))).)))))..-------- ( -30.20) >consensus AAACUCCUUGGUAUUGGUUCCAGCUGGCACAAACUGCAGUGGAUCUUCGAUCCUCACUGGCGUUGAAUGGGUGGGUGAACCCUCAGCGACCCACUUU_A__________ ....((((((......((.((....)).))......))).)))..((((((((.....)).))))))(((((.(.(((....))).).)))))................ (-22.53 = -20.98 + -1.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:09 2006