Locus 4563

Sequence ID 2R_DroMel_CAF1
Location 14,918,790 – 14,918,889
Length 99
Max. P 0.522430
window7310

overview

Window 0

Location 14,918,790 – 14,918,889
Length 99
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 80.40
Mean single sequence MFE -32.85
Consensus MFE -16.51
Energy contribution -17.85
Covariance contribution 1.34
Combinations/Pair 1.43
Mean z-score -2.14
Structure conservation index 0.50
SVM decision value -0.02
SVM RNA-class probability 0.522430
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14918790 99 + 20766785
CGGCUAGGGAACUAUU--GGAAGAGGCUGGU-GAUGUUUCACUGUGAAUUGCUUGUAGUUUUUUGGUACUUUCCACCAGCUUUUCUAGGUUUUCGCCGGCUA
((((..(..((((..(--(((((((.(((((-(..((.(((....((((((....))))))..))).))....))))))))))))))))))..))))).... ( -33.50)
>DroSec_CAF1 5197 99 + 1
CGGCUAGUGAACUAUU--GGAAGAGGCUGGU-GAAGUUUCAGUGUGAAUUGCUUGUAGUUUUUUGGUACUUUCCACCAGCUUUUCUAGAUUUUCGCCGGCUA
.(((..(((((...((--(((((((.(((((-(((((.((((...((((((....)))))).)))).))))..)))))))))))))))...)))))..))). ( -36.50)
>DroSim_CAF1 5124 99 + 1
CGGCUAGUGAACUAUU--GGAAGAGGCUGGU-GAUGUUUCAGUGUGAAUUGCUUGUAGUUUUUUGGUACUUUCCACCAGCUUUUCUAGAUUUUCGCCGGCUA
.(((..(((((...((--(((((((.(((((-(..((.((((...((((((....)))))).)))).))....)))))))))))))))...)))))..))). ( -34.50)
>DroEre_CAF1 5496 99 + 1
CGCCUGGUGAACUACU--GGAAGAAACGGGU-GAUGUUUCCGUGUGAAUUCCUUGUAGUUUUUUGGUACUCUCCACCAGCUUUACUAGGUUUUCGCCAGCUA
.((((((((((((((.--((((...(((((.-......))))).....))))..)))))...(((((.......)))))..)))))))))............ ( -29.30)
>DroYak_CAF1 5131 99 + 1
CGACUGGUGAACUACU--GGAAGAAACGGGU-GAUGUUUCAGUGCGAAUUCCUUGUAGUUUUUUGGUACUCUCCACCAGCUUUCCUAGGUUCUCGCCAGCUA
.(.((((((((((((.--((((....((.((-((....))).).))..))))..)))))...(((((.......))))).............)))))))).. ( -25.00)
>DroAna_CAF1 5514 102 + 1
CGGCCAGGGCCCUGUCCCUCAAGGAGCUGCUAGAUGUCUGGACGUCGAGGGUCUGCAUCUUCUUGGUCGUGGCCACCAGCUUCUCCAGAUUCUCGCCGGCCA
.((((..((((((........))).)))((.(((.(((((((.((.(..((((.(((((.....))).))))))..).))...)))))))))).)).)))). ( -38.30)
>consensus
CGGCUAGUGAACUAUU__GGAAGAAGCUGGU_GAUGUUUCAGUGUGAAUUGCUUGUAGUUUUUUGGUACUUUCCACCAGCUUUUCUAGAUUUUCGCCGGCUA
.((((.((((...(((.....((((((((((.((.((.((((...((((((....)))))).)))).))..)).))))))))))...)))..)))).)))). (-16.51 = -17.85 +   1.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:07 2006