Locus 4562

Sequence ID 2R_DroMel_CAF1
Location 14,916,181 – 14,916,282
Length 101
Max. P 0.996773
window7309

overview

Window 9

Location 14,916,181 – 14,916,282
Length 101
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 94.06
Mean single sequence MFE -17.30
Consensus MFE -14.84
Energy contribution -15.68
Covariance contribution 0.84
Combinations/Pair 1.04
Mean z-score -2.33
Structure conservation index 0.86
SVM decision value 2.75
SVM RNA-class probability 0.996773
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14916181 101 - 20766785
AGAAUCAUACUUACAUUACUUUCUAUAUCCACAUCACCCGCCAUUUGAUAUAUAUCGAUUCUAGCACUUGUCUCUCAACUGGCUCAAAAGUAUGCGUUCCU
.(((((((((((...........................((...(((((....))))).....))....(((........)))....))))))).)))).. ( -13.80)
>DroSec_CAF1 2616 101 - 1
GGAAUCAUACUUACAUUACUUUCUGUAUCCACAACACCCGCCAUUUGAUAUAUAUCGAUUCUAGCACUUAUCUCUCAACUGGCUCUAAAGUAUGAGUUCCU
((((((((((((....(((.....)))............((((.((((.(.(((..............))).).)))).))))....)))))))).)))). ( -20.54)
>DroSim_CAF1 2600 101 - 1
GGAAUCAUACUUACAUUACUUUCUGUAUCCACAACACCCGCCAUUUGAUAUAUAUCGAUUCUAGCACUUAUCUCUCAACUGGCUCAAAAGUAUGAGUUCCU
((((((((((((....(((.....)))............((((.((((.(.(((..............))).).)))).))))....)))))))).)))). ( -20.54)
>DroEre_CAF1 2775 101 - 1
AGAAUCAUACUUACAUUACUUUUUGUACGCACAACACCCGCCAUUUGAUAUAUAUCGAUUCUAGCACAUAUCUCCCAACUGGCCCAAAAGUAUGCGUUCCU
.((((((((((((((........))).............((((.(((....((((............))))....))).))))....))))))).)))).. ( -14.30)
>DroYak_CAF1 2584 101 - 1
GGAAUCAUACCUACAUUACUUUCUGUAUGCACAACACCCGCCAUUUGAUAUAUAUCGAUUCUAGCACUUAUCUCUCAACUGGCCCAAAAGUAUGCGUUCCU
((((((((((.((((........))))............((((.((((.(.(((..............))).).)))).))))......))))).))))). ( -17.34)
>consensus
GGAAUCAUACUUACAUUACUUUCUGUAUCCACAACACCCGCCAUUUGAUAUAUAUCGAUUCUAGCACUUAUCUCUCAACUGGCUCAAAAGUAUGCGUUCCU
((((((((((((....(((.....)))............((((.((((.(.(((..............))).).)))).))))....))))))).))))). (-14.84 = -15.68 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:06 2006