Locus 4559

Sequence ID 2R_DroMel_CAF1
Location 14,906,116 – 14,906,222
Length 106
Max. P 0.575975
window7305

overview

Window 5

Location 14,906,116 – 14,906,222
Length 106
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 83.14
Mean single sequence MFE -35.40
Consensus MFE -22.37
Energy contribution -24.07
Covariance contribution 1.70
Combinations/Pair 1.14
Mean z-score -2.20
Structure conservation index 0.63
SVM decision value 0.08
SVM RNA-class probability 0.575975
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14906116 106 - 20766785
ACUCCAAUGGACGCGAGAUCCAGUUUCAAGCUUUUGCAGGUGACUGGAGACGGGUCCGUUCGGAUACCUUUUGAUCAGAAAGUGUAAGCAUUCUGAUCUGGAUGAU
..((((((((((.((...(((((((.(..((....))..).)))))))..)).))))))).)))..((....((((((((.((....)).)))))))).))..... ( -42.80)
>DroSec_CAF1 1082 106 - 1
ACUCCAAUUUACGCGAGAUCCAGUUUGAAGCUUAUGCAGGUGACUGGAGACGGGUCCGUUCGGAUACCUUUUGAUCAGAAAGUGUAAGCAUUCUGAUCUGGAUGAU
..((((.....(....).(((((((....((....))....)))))))...((((((....)))).))....((((((((.((....)).)))))))))))).... ( -32.40)
>DroSim_CAF1 1074 106 - 1
GCUCCAAUGGACGCGAGAUCCAGUUUGAAGCUUUUGCAGGUGACUGGAGACGGGUCCGUUCGGAUACCUUUUGAUCAGAAAGUGUAAGCAUUCUGAUCUGGAUGAU
..((((((((((.((...(((((((....((....))....)))))))..)).))))))).)))..((....((((((((.((....)).)))))))).))..... ( -41.90)
>DroEre_CAF1 1079 106 - 1
ACUCCAAUGGACGCGAGAACCACUUUGGAGCUUUUGCAGGUGACUGGAGACGGGUCCGUUCGGAUACCUUUUGAUCAGAAAGUGUAAGCAUUCUGAACUCGAUGAC
..((((((((((.((((..((.....))..))(((.(((....))).))))).))))))).)))......((((((((((.((....)).))))))..)))).... ( -33.60)
>DroYak_CAF1 1020 106 - 1
ACUCCAAUGGACGCGAGAACCACUUUGAAGCUCUUGCAGGUGAGUGGAGACGGGUCCGUUGGGAUAGCUUUUGAUCAGAAAGUGUAAGCAUUCUGAACUCGAAGAC
..((((((((((.((....((((((....((....))....))))))...)).)))))))))).....((((((((((((.((....)).))))))..)))))).. ( -38.50)
>DroPer_CAF1 1080 106 - 1
GCUUAAAUGUAACCGACAGCCUGGCUGCAGUUGGUGCAAGUGACUAGAUACAGGUCCAUUAGUAUAUCGCUUAAUCAGAAAGUGCAGGCUCACAGAACUCGCCAGG
...................((((((((((.(((((..((((((....((((..........)))).)))))).)))))....))))(.....).......)))))) ( -23.20)
>consensus
ACUCCAAUGGACGCGAGAUCCAGUUUGAAGCUUUUGCAGGUGACUGGAGACGGGUCCGUUCGGAUACCUUUUGAUCAGAAAGUGUAAGCAUUCUGAACUCGAUGAU
..((((((((((.((....((((((....((....))....))))))...)).))))))).)))..........((((((.((....)).)))))).......... (-22.37 = -24.07 +   1.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:02 2006