| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,902,749 – 14,902,869 |
| Length | 120 |
| Max. P | 0.595215 |
| Location | 14,902,749 – 14,902,869 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.61 |
| Mean single sequence MFE | -29.12 |
| Consensus MFE | -9.72 |
| Energy contribution | -9.28 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.53 |
| Mean z-score | -2.40 |
| Structure conservation index | 0.33 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.595215 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14902749 120 + 20766785 GCCGCAGUGCUUUCCAUCCUCUGCAUUGCCAUCAAUUAUUAUGGAUUGCGCACCACCUAUGUCAUUACAUGGACGCUGGCAUUCUACGUAAUACCAUUGGCCUUCAAUCUUCUUACCACA ((((((((((............))))))).......(((((((((.(((.((.(..((((((....))))))..).))))).))..))))))).....)))................... ( -27.80) >DroPse_CAF1 85275 120 + 1 GCCACUAUCCUGGCCAUCCUCGGCAUUGGACUCACGCUCUAUGGACUGCGUACCACCUACGUCGUCACGUGGACGCUUCUCUUCUACGUGAUUCCCUUGGCCAUCAACCUUCUCACGACU ((((......)))).......(((...(((.(((((((((((((((.(((((.....))))).))).)))))).))...........)))).)))....))).................. ( -33.20) >DroEre_CAF1 75551 120 + 1 GCCGCAGUGCUUUCCAUUCUCUGCAUUGCCAUCAAUUACUAUGGAUUGCGCACCACCUAUGUCGUCACCUGGACACUGGUCUUCUACGUACUCCCACUGGCCUUCAAUCUCCUUACCACC ((((((((((............))))))).............(((.((((....(((..((((........))))..)))......)))).)))....)))................... ( -27.80) >DroWil_CAF1 118905 120 + 1 GCUGUUGUACUAGCCGUUCUGGCCAUUGCUCUCAAUUACUAUGGACUGCGUACAACUUAUGUUUUCACCUGGACUCUGAUCUUCUAUGUCAUUCCUUUGGCAUUGAAUCUACUGCUUACC ((.(((((((..((.(((((((..((((....))))..))).)))).)))))))))....((((......)))).......(((.((((((......)))))).)))......))..... ( -24.60) >DroYak_CAF1 76703 120 + 1 GCCGCAGUGGUUGCCAUCCUCUGCAUCGCCAUCAAUUACUAUGGAUUACGCACCACCUAUGUCAUCACAUGGACCCUGGUCUUCUACGUAAUCCCAUUGGCCUUCAAUCUCAUUACCACC (((((((.((.......)).))))..................((((((((.((((.((((((....))))))....))))......))))))))....)))................... ( -29.00) >DroPer_CAF1 82270 120 + 1 GCCACUAUCCUGGCCAUCCUCGGCAUUGGACUCACGCUCUAUGGACUGCGUACCACCUACGUCGUCACGUGGACCCUUCUCUUCUACGUGAUUCCCUUGGCCAUCAACCUUCUCACGACU ((((......)))).......(((...(((.(((((.(((((((((.(((((.....))))).))).)))))).............))))).)))....))).................. ( -32.34) >consensus GCCGCAGUGCUUGCCAUCCUCGGCAUUGCCAUCAAUUACUAUGGACUGCGCACCACCUAUGUCGUCACAUGGACCCUGGUCUUCUACGUAAUUCCAUUGGCCUUCAAUCUUCUUACCACC ((((....((..((........))...)).........((((((((.(((.........))).))).))))).........................))))................... ( -9.72 = -9.28 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:01 2006