Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,896,667 – 14,896,781 |
Length | 114 |
Max. P | 0.555777 |
Location | 14,896,667 – 14,896,781 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 74.91 |
Mean single sequence MFE | -35.95 |
Consensus MFE | -16.36 |
Energy contribution | -16.59 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.39 |
Mean z-score | -1.83 |
Structure conservation index | 0.46 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.555777 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14896667 114 + 20766785 AAAUCAAAAACCAGGAACAAUACUUACGAGGACCCUGGUAUUUGGCCACUGGUUUUCUACUGUUUUGGGCACUCCUCUUCUCGGCCGUGGUAUUACCACUCUUUUACCGCAUUC ......(((((((((..(((....(((.((....)).))).)))..).))))))))...........(((.............)))((((((............)))))).... ( -26.32) >DroPse_CAF1 75021 114 + 1 AUGCCAGGAAACAGGAGCAGACCUCCAGAGGUCCCUGGUACAUGGCCAGCGGCUUCCUUCUGUUUUGGCUGCUCCUCUUCUUUGCCGUAGUGGUGCCACUCUUCUACCGCCUGC ..((.(((((..((((((((.((..((((((.(((((((.....))))).))...)).))))....)))))))))).))))).)).(((((((((.........))))).)))) ( -43.80) >DroEre_CAF1 69130 114 + 1 AUAUCAGGAAGCAGGAGCAAAGCCUACGAGGUCCAUGGUACUUAGCCAGUGGUUUUCUGCUGUUUUGGGCGCUGCUGUUCUCGGCUGUGGUAUUGCCACUCUUUUAUAGCAUUC ...((((((((((((((....(((.....)))(((((((.....)))).))).)))))))).))))))..(((((((....)))).((((.....))))........))).... ( -33.10) >DroWil_CAF1 108672 113 + 1 ACGGCAAC-AACAGCAGCAGAAUACUAGAGUUCCCUGGUACUUGGCCAGUGGAUUCCUCUUGUUUUGGGUUUUACUCUUCUAUGCUGUUGUGAUUCCACUAUUCUACCGCCUAC ..(((.((-(((((((..((((.((.((((.((((((((.....))))).)))...)))).))...(((.....))))))).)))))))))((.........))....)))... ( -36.50) >DroYak_CAF1 70613 114 + 1 AAAUCAGAAACGAGGAGCAAAACUUGAGAGGUCCCUGGUAUUUGGAAGGUGGUUUUCUACUGUUCUGGGCACUCCUGUUCGCGGCUGUGGUAUUACCACUCUUCUAUAGCAUUC ....((((.((.(((..(............)..))).)).))))(((((((((...((((.((..((((((....))))))..)).))))....))))).)))).......... ( -32.20) >DroPer_CAF1 72065 114 + 1 AUGCCAGGAAACAGGAGCAGACCUCCAGAGGUCCCUGGUACAUGGCCAGUGGCUUCCUUCUGUUUUGGCUGCUCCUCUUCUUUGCCGUAGUGGUGCCACUCUUCUACCGCCUGC ..((.(((((..((((((((.((..((((((.(((((((.....))))).))...)).))))....)))))))))).))))).)).(((((((((.........))))).)))) ( -43.80) >consensus AUAUCAGGAAACAGGAGCAAAACUCAAGAGGUCCCUGGUACUUGGCCAGUGGUUUCCUACUGUUUUGGGCGCUCCUCUUCUCGGCCGUGGUAUUGCCACUCUUCUACCGCAUUC ............(((((((((((....((((((.(((((.....))))).)))))).....))))))....))))).......((.((((.............)))).)).... (-16.36 = -16.59 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:58 2006