Locus 4555

Sequence ID 2R_DroMel_CAF1
Location 14,895,620 – 14,895,729
Length 109
Max. P 0.525685
window7300

overview

Window 0

Location 14,895,620 – 14,895,729
Length 109
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 87.69
Mean single sequence MFE -36.42
Consensus MFE -25.08
Energy contribution -26.32
Covariance contribution 1.24
Combinations/Pair 1.11
Mean z-score -1.79
Structure conservation index 0.69
SVM decision value -0.02
SVM RNA-class probability 0.525685
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14895620 109 + 20766785
AGGUAUUU------UCCGUCUACUUGGAAACAGACAGGCCCAAUCAAUAUACCCAAUCAACAGCAAUUGGGUUGUGGUGGGUCUAGUUUGGUUCUUAUCGCGGCGCAUGAAGUCA
.((((.((------((((......))))))((((((((((((.(((....(((((((........)))))))..)))))))))).))))).....))))..(((.......))). ( -36.10)
>DroSec_CAF1 67490 112 + 1
AGGUAUUUGCACGUUGCGUCUACUUGGAAACAGGCAGGCCCAUU---UAUACCCAAUCAACAGCAAUUGGGUUGUGGUGGGUCUAGUUUGGUUCUUAUGACGGCGCAUGAAGUCA
.......((.((..((((((.....((((.((((((((((((((---...(((((((........)))))))...))))))))).))))).))))......))))))....)))) ( -40.00)
>DroSim_CAF1 69499 112 + 1
AGGUAUUUGCACGUUCCGUCUACUUGGAAACAGGCAGGCCCAUU---UAUACCCAAUCAACAGCAAUUGGGUUGUGGUGGGUCUAGUUUGGUUCUUAUCGCGGCGCAUGAAGUCA
..(.((((.((.((.((((......((((.((((((((((((((---...(((((((........)))))))...))))))))).))))).))))....)))).)).))))))). ( -38.70)
>DroEre_CAF1 67926 112 + 1
AGGUACCUGCACGUUAUGUCUACUUGGAAACUGGCAGGCCCAUC---UAUUCCCAAUCAACAGCUAUUGGGUUGUGGUGGGUCUAGUUUGGGUCUUAUCGCGGCGCAUGAAGUCA
..(..((.((......((((.....(....).))))((((((.(---((..((((....((((((....))))))..))))..)))..)))))).....))))..)......... ( -35.90)
>DroYak_CAF1 69647 106 + 1
AGGUA------CGUUACUUGUACUUGGAAACAGGCAGGGCCAGC---UAUUACCAAUCAACAGCUAUUGGGUUGUGGUGGGUCUAGUUUGGGUCUUAUCGCGGCGCAUGAACUCA
(((((------((.....)))))))(((..(((((.(((((.((---(((..(((((........)))))...))))).))))).)))))..))).................... ( -31.40)
>consensus
AGGUAUUUGCACGUUACGUCUACUUGGAAACAGGCAGGCCCAUU___UAUACCCAAUCAACAGCAAUUGGGUUGUGGUGGGUCUAGUUUGGUUCUUAUCGCGGCGCAUGAAGUCA
................((((.....(((..((((((((((((((......(((((((........)))))))...))))))))).)))))..)))......)))).......... (-25.08 = -26.32 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:56 2006