Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,890,570 – 14,890,674 |
Length | 104 |
Max. P | 0.647668 |
Location | 14,890,570 – 14,890,674 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 82.88 |
Mean single sequence MFE | -36.74 |
Consensus MFE | -25.56 |
Energy contribution | -28.37 |
Covariance contribution | 2.81 |
Combinations/Pair | 1.15 |
Mean z-score | -1.92 |
Structure conservation index | 0.70 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.647668 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14890570 104 + 20766785 UAUCUUUAGGGGACCGGAGCGACUGGUACCUCAAUUGGCACUCGAAGGUUGAGGUCCCCGGUUGCGGGAGAACCAAAGGAUUAAAAAAGCGUAUCGGUCCGGCA ..........(((((((.((((((((.(((((((((..(....)..)))))))))..))))))))((.....))...................))))))).... ( -40.00) >DroSec_CAF1 62466 104 + 1 UAUCUUUAGGGGACCGGAGCGACUGGUACCUCAAUUGGCACUCGAAGGUUGAGGUCCCCGGUUGCGGGAGAACCAAGGGAUUAGAAAGGCGAAUCGGUCCGGCA ..........(((((((.((((((((.(((((((((..(....)..)))))))))..))))))))((.....))...................))))))).... ( -40.00) >DroSim_CAF1 64422 104 + 1 UAUCUUUAGGGGACCGGAGCGACUGGUACCUCAAUUGGCACUCGAAGGUUGAGGUCCCCGGUUGCGGGAGAACCAAGGGAUUAGAAAGGCGAAUCGGUCCGGCA ..........(((((((.((((((((.(((((((((..(....)..)))))))))..))))))))((.....))...................))))))).... ( -40.00) >DroEre_CAF1 62969 104 + 1 UAUCUUUAGGGGACCCGAGCGACUGGUACCUCAAUUGGCACUGGAAAGUUGAGGUCCCCGUUUGCGGGAGAACCAAAGGAUUGAAAAAGCGGAGCGGUCCGUUA .((((((.((...((((...(((.((.(((((((((..(....)..))))))))).)).)))..))))....)).))))))......((((((....)))))). ( -37.30) >DroYak_CAF1 64801 92 + 1 UAUCUUUAGGCGACCGGAGCGACUGGUACCUCAAUUGGCACUUGAAGGUUGAGGUCCCCGGUUGCGGGAGAACCAAAGGAUUAGCAAAGCGG------------ .((((((..((((((((.......((.(((((((((..(....)..)))))))))))))))))))((.....)).))))))...........------------ ( -32.61) >DroAna_CAF1 70761 104 + 1 UAUCUUUAGGGAACCGGAGCAAAUCAAUCCUCACUUGGAAGUGGAAGGUGGUGGUCCCUGGUUGUGGGAUAACGAGGGAAUACAGAAACCAGAUCGGUCUGGCA ..(((....))).(((((.(...(((.(((......)))..)))..(((.(((.(((((.(((((...))))).))))).)))....))).....).))))).. ( -30.50) >consensus UAUCUUUAGGGGACCGGAGCGACUGGUACCUCAAUUGGCACUCGAAGGUUGAGGUCCCCGGUUGCGGGAGAACCAAAGGAUUAAAAAAGCGGAUCGGUCCGGCA ..........(((((((.((((((((.(((((((((..(....)..)))))))))..))))))))((.....))...................))))))).... (-25.56 = -28.37 + 2.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:55 2006