Locus 4553

Sequence ID 2R_DroMel_CAF1
Location 14,887,380 – 14,887,477
Length 97
Max. P 0.999963
window7298

overview

Window 8

Location 14,887,380 – 14,887,477
Length 97
Sequences 4
Columns 119
Reading direction forward
Mean pairwise identity 69.91
Mean single sequence MFE -26.88
Consensus MFE -16.54
Energy contribution -16.73
Covariance contribution 0.19
Combinations/Pair 1.26
Mean z-score -3.11
Structure conservation index 0.62
SVM decision value 4.94
SVM RNA-class probability 0.999963
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14887380 97 + 20766785
AAUUUGAGAUUAAAGAUAGAAACGAAAGGUUGUUCUUA----------------------GUAAGAAAGUGAUCUUCUGAGAGACGAACUAACUUUUUCUUUUAGUCACUCAAACUUCC
..((((((......(((.((((.(((((((((((((((----------------------(.((((......)))))))))))......))))))))).)))).))).))))))..... ( -20.40)
>DroSec_CAF1 59287 97 + 1
AAUACGAGAUUAAAGAUUGAAAGGAAAGGUUGUUCUUG----------------------GUAAGAAAGUGAUCUUAUGAGAGUCGGACUAACUUUUUCUUUCAGUCCCAAACACUCGC
....((((......(((((((((((((((((((((((.----------------------((((((......)))))).))....)))).))))))))))))))))).......)))). ( -30.92)
>DroSim_CAF1 61248 97 + 1
AAUAAGAGAUUAAAGAUAGAAAGGAAAGGUUGUUCCUA----------------------GUACGAAAGUGAUCUUAUGAGAGUCGAACUAACUUUUUCUUUCAGUCCCAAACACUCGC
.....(((......(((.(((((((((((((((((...----------------------.(((....))).(((....)))...)))).))))))))))))).))).......))).. ( -26.12)
>DroYak_CAF1 61531 112 + 1
GAUUUCAGAUUAAAGAUUGAAAGAAGAGGUCGUUCUUGAGGCUUAACUGUCCUAUCAGUUAUUAGAAUAUGAACUUAUAAGUGUCGAAACAACUUUUUCUUUCAACCUUAU--A-----
............(((.((((((((((((((.(((.((((.(((((((((......)))))......(((......))))))).))))))).)))))))))))))).)))..--.----- ( -30.10)
>consensus
AAUAUGAGAUUAAAGAUAGAAAGGAAAGGUUGUUCUUA______________________GUAAGAAAGUGAUCUUAUGAGAGUCGAACUAACUUUUUCUUUCAGUCCCAAACACUCGC
..............((((((((((((((((((((((((.......................)))))).....(((....))).......))))))))))))))))))............ (-16.54 = -16.73 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:54 2006