| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,884,237 – 14,884,347 |
| Length | 110 |
| Max. P | 0.645927 |
| Location | 14,884,237 – 14,884,347 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 79.76 |
| Mean single sequence MFE | -30.40 |
| Consensus MFE | -21.32 |
| Energy contribution | -21.52 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.645927 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14884237 110 - 20766785 CGAACUUACCAAUUGACUGGUGAAAAUAUUUUGGCUCUGGUCAAGGCCCUGGCCAACGCAGAAGAACUGGAGAAUCCAUCGGUGGGUUCUUCGAAA-AAUUUGUGUAAAAA .....((((((......))))))........(((((..(((....)))..)))))(((((((.....(((((((((((....)))))))))))...-..)))))))..... ( -36.50) >DroSec_CAF1 56188 110 - 1 CGAACAUACCAACUGACUGGUGAAAAUAUUUUGGCUCUGGUCAAGGCUCUGGCCAACGCAGAAGAACUGGAGAAUCCAUCGGUGGGUUCUUCGAAA-GAAUUGUAAAAAGG ......(((((......)))))........((((((..(((....)))..)))))).((((......(((((((((((....)))))))))))...-...))))....... ( -29.30) >DroSim_CAF1 58102 110 - 1 CGAACAUACCAACUGACUGGUGAAAAUAUUUUGGCUCUGGUCAAGGCUCUGGCCAACGCAGAAGAACUGGAGAAUCCAUCGGUGGGUUCUUCGAAA-GAAUUGUAAAAAAG ......(((((......)))))........((((((..(((....)))..)))))).((((......(((((((((((....)))))))))))...-...))))....... ( -29.30) >DroEre_CAF1 56729 107 - 1 CGCACUUACCAGCUGACUGGCGAAAAUAUUUUGGCUCUGGUCAAGGCUCUGGCCAACGCAGAGGAACUGGAGAAUCCAUCGGUGGGUUCCACGAAA-GACUUGU-AAAU-- .(((....((((.(..((.(((........(((((....)))))(((....)))..)))..))..))))).(((((((....)))))))..(....-)...)))-....-- ( -29.30) >DroWil_CAF1 91433 109 - 1 CGUACUUAUCAAUUGACUGGUGAAAAUAUAUUGGCUUUGGUUAAAGCUUUGGCUAAUGCCCAUGAACUGGAAGAUCCUUCGGUAAGCAGUUCGCCA-ACUUUGUAAAGAA- ....(((..(((.....(((((((....(((.(((.((((((((....)))))))).))).))).((((((......))))))......)))))))-...)))..)))..- ( -24.90) >DroAna_CAF1 64799 103 - 1 CGAACCUACCAACUAACUGGCGAAAAUGUCUUGGCUCUGGUCAAGGCUUUGGCGAAUGCCGAAGAACUGGAGAAUCCAUCGGUGGGUA---GAGUGGUUC-UUU-AUA--- .(((((.(((.(((.(((((.......((((((((....))))))))((((((....))))))....(((.....)))))))).))).---).)))))))-...-...--- ( -33.10) >consensus CGAACUUACCAACUGACUGGUGAAAAUAUUUUGGCUCUGGUCAAGGCUCUGGCCAACGCAGAAGAACUGGAGAAUCCAUCGGUGGGUUCUUCGAAA_GAAUUGUAAAAAA_ .(((((((((.........(((........((((((..(((....)))..)))))))))....((..(((.....))))))))))))))...................... (-21.32 = -21.52 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:53 2006