Locus 4551

Sequence ID 2R_DroMel_CAF1
Location 14,883,658 – 14,883,766
Length 108
Max. P 0.819570
window7296

overview

Window 6

Location 14,883,658 – 14,883,766
Length 108
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 78.49
Mean single sequence MFE -26.17
Consensus MFE -17.66
Energy contribution -16.92
Covariance contribution -0.75
Combinations/Pair 1.52
Mean z-score -1.57
Structure conservation index 0.67
SVM decision value 0.68
SVM RNA-class probability 0.819570
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14883658 108 - 20766785
----AAUCCUUUUCAGCAUGGUUUACCCCUGGGCUAUGGCAUUCAACUAUUGAUGCAUUCGCAUUGCCUGAUCUUGACCAUUAUCACCGCCAUAAUGGUGAGCUAUAGUAUU
----........((((...((....)).))))((((((((...........(((((....))))).........(.((((((((.......)))))))).)))))))))... ( -25.80)
>DroVir_CAF1 68796 109 - 1
---UAUUUAUUUCUAGCAUGGUCUACCACUUGCGUAUGGCAUUCAGCUUCUGAUGCACUCGCAUUGCUUAAUAUUGACUGUAAUUACUAUUAUAAUGAUAUCCUUUAACAUA
---....((((...(((((((....)))..((((....((((.(((...)))))))...)))).)))).)))).....((((((....)))))).................. ( -18.50)
>DroSim_CAF1 57525 108 - 1
----AAUCCUUUUCAGCAUGGCUUACCCCUGGGCUAUGGCAUUCAGCUAUUGAUGCACUCUCAUUGCCUGAUCUUGACCAUUAUCACCGCCAUAAUGGUGAGCUAUAGUAUU
----...........((((((((((((....(((.((((((.((((.((.(((.......))).)).))))...)).)))).......))).....)))))))))).))... ( -28.10)
>DroEre_CAF1 56155 111 - 1
-UUUUUUUCCUUCCAGCAUGGCCUACCCCUGGGCUAUGGCAUCCAGCUAUUGAUGCAUUCGCAUUGCCUGAUCUUGACCAUUAUCACCGCCAUAAUGGUGAGCUACAGCAUU
-...............(((((((((....)))))))))(((((........)))))........(((.((..(((.((((((((.......)))))))))))...))))).. ( -28.80)
>DroYak_CAF1 57663 112 - 1
CUUUUCUACUUUUUAGCAUGGCUUACCCCUGGGCUAUGGCAUUCAGCUGUUGAUGCAUUCGCAUUGCCUGAUCCUGACCAUCAUCACCGCCAUAAUGGUGAGCUAUAGCAUU
...............((((((((((((....(((.((((((.((((....((((((....)))))).))))...)).)))).......))).....)))))))))).))... ( -30.90)
>DroAna_CAF1 64225 108 - 1
----GUUUCUUUUUAGCAUGGUCUUCCCCUGGGUUAUGGCAUACAGUUGCUAAUGCACUCGCACUGCUUGAUUCUGACCAUCAUCACGAUUGUAAUGGUCAGCUACGGCAUA
----........((((((..(((..((....))....))).......))))))(((....))).((((.....((((((((...((....))..))))))))....)))).. ( -24.90)
>consensus
____AUUUCUUUUCAGCAUGGCCUACCCCUGGGCUAUGGCAUUCAGCUAUUGAUGCACUCGCAUUGCCUGAUCUUGACCAUUAUCACCGCCAUAAUGGUGAGCUAUAGCAUU
............((((...((....)).))))((((((((...........(((((....)))))......................((((.....)))).))))))))... (-17.66 = -16.92 +  -0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:52 2006